RNA id: TCONS_00040181


Basic Information

Item Value
RNA id TCONS_00040181
length 2703
lncRNA type inter_gene
GC content 0.38
exon number 7
gene id XLOC_020205
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9782954 ~ 9791367 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacacatttcttgtCTGTATGGGGTTTGCAATGCAATAATGTtgagctttttttgttttcaaatgtaaCCTTTCTGAGATGTTAAAAAGGGGGATTTACACATGTGTCTGTTTTTACCTGTGGCTTTTAGAGGGTTTTATGTTGACACATCAGCAACTTCAGACAAACACTGTAGAGAACTTAATCACATCACCAGCAGtttttcgtGGAGATGAACCAAAGACAGTTTCAGTGACTGAGGGAGATTCTGTCACGCTAAACACTGGTGTTACTAAAATACAGAGCAATGATCAGATACTGTGGACATTTTGGCTTAAAAATACAGAGACTCGTATAGCTGAAATCTATAAagagagaaaatatatatatgagaatGAGATATTCAGACACAGACTACAGTTAGATGAGAAGTCTGGATCTCTGATCATCACAAACATCAACAAACTGCACTCTGGACTTTATAAACTAATGATCATCAGTGGAGGGGTCAAACACAGACATTTTAACATTGCTGATTATGCACCTCTAACTGTTCCTGTGATCAGCGATTCTCCTCCAAACCCTTCAGTATCAAAAAGATCCTTAAACCAGAACTGTTCGCTGgtgtgttcagtggtgaatgtgagtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctTTCTCTACCTCTGGAGATTGAGTGTCTGGATGACTCCTACAGCTGTGTTGTGGCTTACTCATTCACAAACCAGACTACACACCTCAACATTACTCAGCTATGCGGGACATGTTCAGCAACCAGACAACTCTTTATTCAGAAAGCTCTAATAATTACTGGTGTagtcctgttgttgttgttgttgctggtggTCACAGTTGGAGTTATGAAGTTCTGGCACAGGAGGAACAACAAACCAGCAATTGAAACTACAGAAGAAGAGGTCGTTTATACTGATGCAACATTTACTACACACAGAGCTCCAGATACTAAAACTAAGGGACTGGATCAGACCGAGTATTCAGAAGTGTTTCTGAGATGATGAGCAAGTCTGGTCATGGAGAGAATGCCCTGTTGTTTTCAGGAAGCAGCAGCATGTTGGAATGGATGAGGGTATACTGTAGCAAtgcaaaactgcagcaactgtcAGTATGGTTTCAGTATTCATGCTATACACACCAGTAAAGTCCACATTAACCAGAAGCTGCGActgtttttttcatattgtgaatCGATTCCTAGAGAAACGAAAAATTAAATGAGACGGTggatgtggcttgtttttttttctactgcgagctgaatgAATGTAAAGCCTTCCATACAGAAAGGTCAGTAAAAGGGTTTCAGATAAGTTATTACAATCCaacacacacacctcctcctCATTCTTTTTATTTGCTGTCAAAACTGAGAGTTGTAGGGGTGTAATTAAGTATGTTAACCATGTCCAATACTTCAAAATcatgtaatctgagaatttaactgaaaacaacacaggaagtgcattttcagatttagattttagattagaatggcaaacatttttttcttaaagacatgcgctgtcacaaaactggcaatgtgagctaacagaATCAATATGGttggtttttatttcatttgtttctgATTATTGGCATTGAGGGTTCCTCGAAGAACCTTTAACATGATAGAACCTTTTAATACTGCAgtagattaaaataaaaaggtaTAAGCAAGAACGAGCCAGGCGCTAATTCAGAGCCACTGCTATTGTCGGTTAGGAGCTGGTTGGTCTGGTGAACCTTGTAAGACGTGCTTTGCTTTTCCATCAGCTAAAGCCACCGTAGAGCCAGGTCAGACATCAGTAAATGTATCTTTCCCAGCAACACAAAGCAGAAGCACTGATACAAAACACGCTATCAGCAATCCATTGCTATAAATGTTTACAACTTTGTGAAACAATATCACTATCCAAACACAGTGAAACCAACGTGTTCATAAAGTGCCATAGTGTGTATAGAGAATGATGTCTTCCCTACAACAAACCGTTATTTGAATAGACTGAAACCATAATAAGTTCAACTGCTGCAATTTCAAATATTGCAATGGAAAGATTTCCTTTCGTCTTATTGGTCACAGTAGCCACACCCTTAGCCCCCAGCAAGTTGTTTTTTCCAGTGCCAAGATTCTTACTTCTTACTTTCAGACCAGCAATAATTTGCCcaagactaataataataattaacttacACTTAAGAAAAGCTTTTATGGTTTAGATTTGGTATTTTGGTGGTTAAAAGACAAATAATCATTTTGTTTCAAATTGCCTTGGTGAAAAAAGGGTCATTAATTAGAAACCTTTTTCATGTTATGAAAAGGTTCCCCAAAGAACATTAGAAGTTCTTTAAAAGAaccattttgctttgtttttattttgaggaataataaaataataagaaaatagaGTTTTCTAAAAAGAGTTTCATGGTGGAAGCCAAAATGaaaagggtctggctgcagactgggtgcacatgcaagctgagactgtaTGCAATGCTTTGAGCGTGTACACCTAACCCTGCCGCTAACCCTAACCCTCTAAGTGATATCACTATCTCTATTGAATGCATATGTCTAAAACTGCAAGTCTACAGCCAGATGCTATTGGAAAAAATAGTTTTACATGGcaccaatgc

Function

GO:

id name namespace
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0034109 homotypic cell-cell adhesion biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042066 lncRNA upstream 331728 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00042065 lncRNA upstream 346970 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042064 lncRNA upstream 363552 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042063 lncRNA upstream 399470 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00040166 lncRNA upstream 423551 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00042067 lncRNA downstream 95378 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00042068 lncRNA downstream 106604 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042069 lncRNA downstream 198538 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042070 lncRNA downstream 227533 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00042071 lncRNA downstream 282053 10073420 ~ 10095290 (+) False XLOC_020221
TCONS_00040180 mRNA upstream 7320 9772754 ~ 9775634 (+) True XLOC_020204
TCONS_00040179 mRNA upstream 14404 9764731 ~ 9768550 (+) True XLOC_020203
TCONS_00040178 mRNA upstream 18983 9761930 ~ 9763971 (+) True XLOC_020202
TCONS_00040177 mRNA upstream 27843 9751117 ~ 9755111 (+) True XLOC_020201
TCONS_00040175 mRNA upstream 244883 9522971 ~ 9538071 (+) False XLOC_020200
TCONS_00040183 mRNA downstream 2556 9793923 ~ 9795657 (+) True XLOC_020206
TCONS_00040184 mRNA downstream 15500 9806867 ~ 9808339 (+) False XLOC_020207
TCONS_00040185 mRNA downstream 15579 9806946 ~ 9808794 (+) True XLOC_020207
TCONS_00040186 mRNA downstream 62721 9854088 ~ 9855270 (+) True XLOC_020208
TCONS_00040187 mRNA downstream 70876 9862243 ~ 9868707 (+) False XLOC_020209
TCONS_00040167 other upstream 399470 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 996661 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 1013561 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 1083721 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1517305 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040207 other downstream 367791 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 702888 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 762361 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 881784 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1871250 11662617 ~ 11674637 (+) True XLOC_020251

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_08467514_08479103.mRNA True 2443 mRNA 0.41 11 CI01000030 8467473 ~ 8479252 (-)