RNA id: TCONS_00040190


Basic Information

Item Value
RNA id TCONS_00040190
length 2533
RNA type mRNA
GC content 0.36
exon number 6
gene id XLOC_020210
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9871238 ~ 9880408 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agtaaGACTACGTTAGAACCAGGAACGGATAGATCAcgggctgattttttttttacaaagcctGCGCATGTACATTCTAACGGGCCTTTGTTTGCTAAAAATGGAGAAAAGGATAAGTGCCTAATGTGGATTTTTGTAGTCGGTTTACTATACGCAGTTCAAACAAAACACTTAGATAAGTAAACGTTTTGCGTCAACAATCAAACGCGCTATACATGAGGTGATTTACATACGGACATGTAGATTGAGGAATATGATTCGTAAATCTTTTTTCGTCAGTCTGTGCATTATTTGGTTCTCAAGTGATACATTTGTTTACACAGATGAAGTGATGTCCGTGACTGAGGGAGAATCTGTCACTCTAAACACAGATATAAAGTTAAGTGGACAGATAGAGGAGATTGTGTGGACgcataaaatcaataatttagaCAATATTATAGCTGAAATCAAGGGGAAGAACATCAACATATATCCCAATGTGGTATATGGAGACAGACTGCAGATGGACAATCacactggatctctgaccatcagaAACATCACAACTGAACACTCTGGACTTTATAAACTCCTGATTCGCAACGACAGAGCACTCTCACAAAAGACTTTTACAGTTACAGTGTATGCTCATCTTCCTTTTCCTGTCATCAGCAGAAACTGTTcattatcatcatcttcatcatctgaaCGTTCATCAGTGTCCAGATTGTCAGTGTTGTGTTCAGTGTTGAATGTGAGtgctgtgagtctctcctggtacaaaggaaacagtgtattgtCCAACATCAGTGTGTCTAatctcagcatcagtctctctctacctctggaggtggaaTATCAGGATAACAACACCTACAGCTGTGTGGTCAACAATCCCATCACAAACCGCACCACACATCTGAATACAAGTCAAACCTGTCAGGAAAGATCAGaacCCCTGCAGAATTCACATTTGGTGGGAATAACAGTTAGTGTGATACTGGTTTTGGTTGTATCCAGTGCAGTACTGATATACTTTCATCAAAGAAAATGCAAATCGGtattattattgttgaaataGTTCAGACTTGTGACGAAGAGGTACTTTACGCagaaacaacatttcatgcacgcaGAGTTCATAAGGCGCCAACTAATCAAGACGACCACATCATATACTCCAGCGTTAATGCAAGATGACATCGATCCCAGCTTTTATATGCAGTCAACAATAACAATAGCATATAAAAAGTCATACTGAAGTATTCATTTCAGGACTAAAAGTGCCTCTGCGCTGTAGTTTACCATGGTTATTAAGCATTTTCAACAGTAGCATAGCAAGTGGATAGAGCTGAATACAGTATTAAAGGGGGATGTTTTGTGCTTGTCTTAGTTTGATAATCTAAAGAGCTAGTTGAAAAAACACATTTGGTCATACTGCTTTTATTAATGTCAAACATTTCAGAATAATTTTTAACTCGGTAGAACTAACTTTGAAAAACATTTCATATatacagggtgtctgcggggtcttaaaaagtattataatttgataaatcaattatgagaacaactgtttattaagttaaaggtttgatactgattaagaacttgaagtggtgacgaggttaaaatattacaaggtctttaaaaaggtattgaaattttctttaggattcctgcatataccctgataTAGATGACTAAGGCGTTGCTGCACATTAGAGCTTGAATGTTTGACAGTTACATCAGTTAGTCTTAAAACCTGTTGATACTTGATTTGTGGGTAGTCGTGTATAAGAAATTTTGTCTAAGGCAAGACATGTTCTGACAAGCTCACCTGTGTTTCTGGATTATTTCTACTTTTAGTTTAGATTTAACAGAGAACTCAGGAAGACGTGTTGTAATAATTAGCAATATTGGGACCAATACACCAATCCAAGTCCAAAAATGTCATACTAAGTTCTAATTGTATACATATTTAGTATATTTCTACACTGTTTACATTGCtaagtatattttttttatattgcctTAAGTATTAACAAAAGCAATTCAAAAGGAGCTTATCAGTGTAAGGTGTCCTTTGACCAGTCTGACTGTTACTAAACGTGCTGTTAAAACCGTTGAGATTATCCTTTTGACAACGTCTTTTGTTCAGATGAATGGGAGTGTCAATAGTTAACTGACAGTTATTTTATGGGTTTCCTTCTTTCCAAACAGAACTTATTCCTGACATTTTGGCAGACCAATTGAATGCAGCTGTTAAACTTGCAAAATGGGAACTTTGTGCAGCTAATGCTGAAAATTTCcattgtatttaacattttagcTCTGAGCCTAAAACAGAAAACTTTGCATTACACAGCATTTTCCTTGTACTAATACTGTATTATGTAGCCTTATGGGAATTATTTTCGTAAAAGTCACAAGTAGAGTATTAACACAAAATGCCTCTTTGTTTTTATACagtcaattattttattatgacaTTTCACTGACCTCCACATGTTTACGTTAAGTGTTGCCTCAATAAAAATCGTTTcctctg

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-730 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000105939

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040181 lncRNA upstream 79959 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042066 lncRNA upstream 420100 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00042065 lncRNA upstream 435342 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042064 lncRNA upstream 451924 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042063 lncRNA upstream 487842 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00042067 lncRNA downstream 8376 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00042068 lncRNA downstream 19602 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042069 lncRNA downstream 111536 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042070 lncRNA downstream 140531 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00042071 lncRNA downstream 195051 10073420 ~ 10095290 (+) False XLOC_020221
TCONS_00040187 mRNA upstream 2619 9862243 ~ 9868707 (+) False XLOC_020209
TCONS_00040188 mRNA upstream 6058 9862466 ~ 9865268 (+) True XLOC_020209
TCONS_00040186 mRNA upstream 16056 9854088 ~ 9855270 (+) True XLOC_020208
TCONS_00040185 mRNA upstream 62532 9806946 ~ 9808794 (+) True XLOC_020207
TCONS_00040184 mRNA upstream 62987 9806867 ~ 9808339 (+) False XLOC_020207
TCONS_00040192 mRNA downstream 38638 9917007 ~ 9923692 (+) False XLOC_020213
TCONS_00040193 mRNA downstream 40503 9918872 ~ 9923691 (+) False XLOC_020213
TCONS_00040194 mRNA downstream 43932 9922301 ~ 9923218 (+) True XLOC_020213
TCONS_00040195 mRNA downstream 61532 9939901 ~ 9945637 (+) True XLOC_020214
TCONS_00040196 mRNA downstream 102710 9981079 ~ 9984032 (+) True XLOC_020215
TCONS_00040182 other upstream 81522 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 487842 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 1085033 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 1101933 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 1172093 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040207 other downstream 280789 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 615886 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 675359 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 794782 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1784248 11662617 ~ 11674637 (+) True XLOC_020251

Expression Profile

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