RNA id: TCONS_00040196


Basic Information

Item Value
RNA id TCONS_00040196
length 1529
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_020215
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9981079 ~ 9984032 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTCAGACAAGCAGGAGCAAATGGCACAAAAAGGGGTGATCCAATAGAGTAAAACCTTGCTCACACTGTGGGATTTCAGCCACGATTTAGTCGTCTAATACAaatttgagaaactgaaatagattcCTAAAATCATAGGCTAACAAGGACAGCCACTATTGACAGTTATAATCAGATTTCCCCTCTGATGAAGTTCTGAAACTGacattatgacagctgagatcttacagtgtgacatgggaacCAACTGTGGGAGCACATGCATATGCAGATGACCCAGCCGGgcctcgaatcagtgaccttcttgctgagaggtgattgtgctacgtactgcaccaccgtgacgcccatgCTACAGTTGTTTAGGATTATAAAAAATTGCAGAAAGACAGTCATTAGCTACGTTTCTATCCAATCATAACTTTTGTAAATGCGTCTGCACTCTGCATCCCATGACTTCAAACGCTACCACATGTTCATTGCGTCAGCATCGTCTTCTGAGGCATCAACTttgcttttaaacaaaacaaagcttctcctaccacagtaaattcagtttttactttagatttttagcaccagttaatcaggaagtcacaattttatttaaattgactcgttggatgaaaacactgctttatgcgcacgtcttttatgcgatacgtcagttttgcgcatacatttaattcgctTTTTTATGTCTGAGGTGAATATTTCAATGATTCTGGGTCAGTAACctataaaattgttttaaattatgctGTGATTGTGTTTTGATTCTCATACAGACATAACAAAAACTCCAGTTTCAGTGACTGCAGAAGAATCTGTCACTCTACACTCTAACCTTACAAAAGAACAAAAAGGGATTCATGTCATGTGGATGTTTGAATGTAATCCTAATGGAATGAGTCTGGTTGCTGAAATCCTTAATAACATAACCTCAAAATCTGACTGTGATGATGGGAGATTCAAAGACAGACTGCATATAGACAGTCAGACTGGAGATCTCACGATCACAAACAGCAGCAAAACAGACTCTGGAGTCTTTAAACTACAGATCAACAATGGAGTCTCCAAATGCTGGAGTTTTAATCTTTCTGTCTATGCTCTGCTCCCTGTTCCTGTCATCACCAGACacttttcatcatcatcatcagactCCAGATGTTCAGTGttgtgttcagtggtgaatgtgagtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaaCATCAGGATAACAACAACTACAGCTGTGTGGTCAACAATGCCATCAGAAATCAGACCACACATCTGGACATCAGTCAACTCTGTCCTGATTTGCCAGGCCAGAGAACTCTCATTAAGACAATAGGTGGGGTGGTTGTTGTTGCTCTTGTCCTTGTCTCTGCAGTGATATATTGTCTCTACAAACATTGCACAACAAGAGAAGGCAAGTATTACCTACAGCTGAAATATGGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000124236

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042068 lncRNA upstream 76456 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042067 lncRNA upstream 76581 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00040181 lncRNA upstream 189712 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042066 lncRNA upstream 529853 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00042065 lncRNA upstream 545095 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042069 lncRNA downstream 5873 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042070 lncRNA downstream 34868 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00042071 lncRNA downstream 89388 10073420 ~ 10095290 (+) False XLOC_020221
TCONS_00042072 lncRNA downstream 90833 10074865 ~ 10095290 (+) False XLOC_020221
TCONS_00041885 lncRNA downstream 174431 10158463 ~ 10164865 (+) False XLOC_020223
TCONS_00040195 mRNA upstream 35442 9939901 ~ 9945637 (+) True XLOC_020214
TCONS_00040192 mRNA upstream 57387 9917007 ~ 9923692 (+) False XLOC_020213
TCONS_00040193 mRNA upstream 57388 9918872 ~ 9923691 (+) False XLOC_020213
TCONS_00040194 mRNA upstream 57861 9922301 ~ 9923218 (+) True XLOC_020213
TCONS_00040191 mRNA upstream 100671 9872323 ~ 9880408 (+) True XLOC_020210
TCONS_00040197 mRNA downstream 10801 9994833 ~ 10003688 (+) False XLOC_020217
TCONS_00040198 mRNA downstream 10801 9994833 ~ 10006999 (+) True XLOC_020217
TCONS_00040199 mRNA downstream 26260 10010292 ~ 10014369 (+) True XLOC_020218
TCONS_00040200 mRNA downstream 82814 10066846 ~ 10069938 (+) False XLOC_020220
TCONS_00040201 mRNA downstream 82814 10066846 ~ 10071296 (+) False XLOC_020220
TCONS_00040182 other upstream 191275 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 597595 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 1194786 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 1211686 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 1281846 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040207 other downstream 175126 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 510223 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 569696 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 689119 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1678585 11662617 ~ 11674637 (+) True XLOC_020251

Expression Profile

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