RNA id: XM_036937882.1


Basic Information

Item Value
RNA id XM_036937882.1
length 2788
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110537846
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58225787 ~ 58272786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTCCAGCGCGCTAACGGTAACTAGCAGCAGCAGCCAGCCAGAGAGTCAGCCAGTTATCCATGACTAATAGATAATTGACTTGCTACAATGGCATTTATCAACCACATAAGCGTTTAAAATGGCAATACGTGATACCACCGCGACAGGAGCTGTTAGACATGGCGTGTTTGGTTGCGGTTTGCAGGGACGGGGAAGAGGACTTCCCTTTCCTCGCAAGACAGATTCCCCTGTACATCGATGACACTCTCACAATGGTGATGGAGTTTACTGACGATGCCATGAACCTTGACAGTCACCAGATCAACAGCTCTGAGATGAAGCAGTTTGTTGAGCATCACAGCATGCTGAAGCAGCAGGACCTGAACAACGCCATGATTGTGTCGTCCAGGGAGATGTTCAGCGCCCTGTCCCAGCTGGTGCCGTGCGTGGGCTGCAGGCGGAGTGTGGAGCGCCTCTTCTCCCAGCTGGTGGAGTCTGGGAACTTGGCTCTGGAGCCCCTCACTGTGAAGCCCATCGGCGTGCTCTCTGTCACCAAGGCCTGCGTGGTCAACGCAAAGAAGCTCTACACCCTCTTCTACGTCCACGGgtCAAAGTTGAATGACATGATCGACGCCATTCCAAAAAGCAAAAAGAATAAACGCTGCCAGTTGCACTCCttagacacacacaaacctaagCCACTGGGAGGAGAAGGGAGCGTAGACAAAGGGCTAGGTTTAGAGAAAGACAAAGATGGAGGAGCCAAGAGAGACCGCAGATGTAACGTCGCGTTTCACTTTGGCCCTTTTCAGTCCCCCAGCAGGGGAAGCTGGATGGAGGTGTGGGAGCTCATGTCTCAGGAGTGCAGGGATGAGGTCGTTCTGATTGACGGTGCCTGCCTCCTGGAAACCCTGGACACATACTTGCGCAAACACAGGTTCTGTACTGACTGCAAGAACAAGGTATTGAGAGCATACAACATCCTGGTAGGGGAGCTGGACTGCACTAAAGAGAAGGGCTACTGCGCTGCCTTGTACGAGGGTATCCGCTGCTGCCCCAACGAGCGCCACGTCCATGTCTGCTGCGAGACGGACTTCATCGCCCACCTCCTGGGCCGGGCCGAGCCCGAGTTCACCAGAGGTTATGAatctgttctTAGACGTAGAGAGCGGCACGCTAAGACCATTGACATTGCTCAAGAGGAAGTGCTGACCTGCCTGGGCATCCACCTGTACGAGCGGCTGCACAGAATCTGGCTGAAGCTGAGGGCAGAGGAGCAAACCTGGCAGATGCTCTTCTACCTTGGCATTAACACTCTACGCAAAAGCTTTGagATGGCGGTGGAGAAGGTGCAAGGCATCAGTCGTCTGGAGCAGCTGTGTGAAGAGCTgtcggaggaggagagggccAAGGAGCTGAAGCAGGAGAAGAAGaggcagaagaagaagaacagaCGAAAAAACAAGTGTGGCTTCAACATGTCCGACGGCAAGGAGAAGAGtctggatgagGCTTCATTAGAGTCTGTGGAGAGAAGAGGCTGCAAGGCCTGTGGAAGCCCAGAGGTGGAGGGTCATGTCGGCTGTGTGGAGGTGGTCGTCACCAGCAACGAGAGCACTACTTCCTGCAGCTGTCCAGACGGCACCGTTCCCAAAGTCAAGAAAGGTTTGTCACCCCACAGCAATGGGAGTGACTGTGGCTACTCTTCTAGCATGGAAGGCAGCGAGACTGGCTCACGGGAGGGCTCTGACGTCGCCTGCACTGACGGAATCTGCAACCATGAAGCAGGAGACTACTTGTGTGGTCACCATCATAATCACTGTGATGAAGACGAGGAGGACGGGGTATACAGCTGTGTGGAGTGCTGGGCTAACTCTGAAGAAAACACGAAGGGCAAGAAAAATAATAAAAGAAAGAACAATGGCTCGTTATGTAACGATCAGGGTGGAAAAACAGAGGGTTGTGTGATGGAAGGGTACAGGAGAGGGAAAAACACTTCTACAACGTCACCTGTGTGCAGAACCAAAGAGACGTGTGCCAAGTTGTGCTGTGACACCTTTTCTAGCATTGCACTGCAGTTACCATGGGCAGGACATCAAAAGAACATGAGCCATTATCTGGAGGCAAACATGTGTGGTCAGGGGAACACCAGCGCCAACAGTCTCATGGAACTACTgGATGACTCTGAAGTGACTTCAGACGAAGAGAACTGCCTCACGCAGGACGAGATCCAGTTGTTTGTGGATAGCAACAAGTCCTTCTTCAACAACCGCCACCAGTACAGACAGCACCTGAAGGATAAATTTACCAAGTACTGCCGCGGCGGTGGAGAGTGGTtcgctgctgccaccaccagcgTCAATTAATGAATTCGCTGCTGTTGCACGACTCTACTGTTGTTAAGTCTTTTTAACACATGATTATTACCACTGCTCTGCGCGTACCGCCTTTAAAACAAATAGAAAAAAATCTAAGTACATTTTGGTCTGGGGTTTATTTTGTCCCCCACTCTGTGGTTGAAGTAAATGTGAATCTTAATTTCCACCATTTGTTTATCTTCTCTCCACCTATCTCTGTCCCTACTGTTCACCTATCTCTGTCCCTACTGTTCACCTATCTTGTCACCTCTCCTCATTCACCTTGTCGCCCCATCTTTGTTCTCCTCCCTCCCAGCCTGACCAGTTTCTTTCTGGTCTCATTTTGTAGGGCTCAGTAGATCTGAACACAAGCTTGCAAGCTGTGACATTAGGATTTAAATGTTGGTAGTCAGTGTCGTCCTGTCTAGTTTTTTTTCTCGCATATTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1242094 lncRNA upstream 2045 58224406 ~ 58224606 (+) True G1092080
TU1241902 lncRNA upstream 4461 58218360 ~ 58222190 (+) True LOC118937686
TU1242091 lncRNA upstream 13068 58213298 ~ 58213583 (+) True G1092077
TU1242089 lncRNA upstream 16348 58209418 ~ 58210303 (+) True G1092075
TU1242088 lncRNA upstream 17817 58208149 ~ 58208834 (+) True G1092074
TU1242116 lncRNA downstream 20045 58292728 ~ 58292951 (+) True G1092102
TU1242118 lncRNA downstream 21489 58294172 ~ 58294640 (+) True G1092104
TU1242119 lncRNA downstream 22503 58295186 ~ 58295397 (+) True G1092105
TU1242121 lncRNA downstream 39491 58312174 ~ 58312500 (+) True G1092107
TU1242125 lncRNA downstream 66456 58339139 ~ 58339358 (+) True G1092111
XR_005035046.1 mRNA upstream 4436 58216142 ~ 58222215 (+) False LOC118937686
XM_021624273.2 mRNA downstream 1335 58274018 ~ 58286628 (+) True LOC110537848
LOC110539153 mRNA downstream 255607 58528290 ~ 58530219 (+) True LOC110539153
LOC110538918 mRNA downstream 272463 58545146 ~ 58546597 (+) True LOC110538918
XM_021624297.2 mRNA downstream 302918 58575601 ~ 58624457 (+) False rab28
XM_036937889.1 mRNA downstream 302926 58575609 ~ 58624457 (+) False rab28
TU1241903 other upstream 4461 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 311819 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 1108724 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 1473704 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 1500648 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 1268875 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 1758320 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 2112981 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 2424004 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 2543808 60816491 ~ 60818897 (+) True G1095209

Expression Profile