RNA id: TU1237638


Basic Information

Item Value
RNA id TU1237638
length 8198
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1087945
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 54165891 ~ 54182385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCATCAATATCAGGGGGGAGACCGCCAACGAAGACCTTGCGTGAGTAGCGCTCCACTCGCTCCCCGTTCTGGTGGGGGAAGCAGTGGGGTGAGCCTAGGCCAGGCAGGCTCTGCTCGCCACGCTCGTCGTCAGGGAAACCATCCTCCATGGGGAACAGGGAAGAATGGACTGAGGAGAGGATCACAGacaacaaaaagatcAATACTCATTGGGTTTATTTCCTAGGTGTATCATCAACCAGAGTTGAGTGGAGGGGGTATCATTGAATGGTTAGGTATGGTCTAGCAATTTTAGCTACAACAACATGCCCATTTTACAGTAGCTCATCTGACATGAATCATTGAGTGCCAGAAACAATGCTACAGTAAGGCCCTGCTGATCTGCGTTAACAGGGACTGAGGCAGGGATACTAATCAATCTCCCGCTCTCCACATCCGTCCCCAGCACAGAACTACACAAGCCACCCCTCCCCCATTTCAGCTCAAAACACACAGTCCACACACCCACGAGTGCCTGCAGCCAAGCCCATGGCAGCAGCAGGGGCCGGGCAAGCCTAAAATATCGTTCCGGCCGGGTGTCCTGGAGCCACCCCAGCCTTATTCCTAACCAAGTGACGGAAACCAGAGCTGAGCAGCTTTACGTGAGAGAGTTAGCCCCGAGTCTGTACACTGTGTGTATTGTgtcaaaatctaatcaaattttattggtcacatacatatatttagcagatgttattgtgggtgtagcgaaatgcttgtgttcctagcgctGACAGtgaagtagtatctaacaattcacacaaAACGTAAAATAATGTAATATAAAAAATACACACAAAGTTCGGatacacctattcattcaagggtttctttatttgaactactttctacattgtagaatagtgaagacatcaaaactatgaaataacatatgggaTCATGCAGTAACCAGAAATGCACATtcttggcactctctcaaccggcttcgtgaggtagtcacctggaatgtatgtcaattaacagttgtgccttgttaaaagttaaattccttcttaatgcatttgagccaatcagttgtggtgacaaggtaggggtggtatacagaagatggacttttaccaaatagggtaaAAGTacatatggcaagaacagctcaaataagcaaagaaacagtccatcattactttaagacatgaaggtcagtcaatgctgaacatttcaagaacttaaagtttattcaagtgcagttgcaaagaaccatcaagcgctatgatgaaactggctctcttgaggaccgccacaggaaaggaagatccagagttacctctactgcagaggacatgttcattagagttaccagcctcagaaatacaGCCTAAAAAAACACTTCAGAGTTCAAGTtagacacatcaacatcaactgttcagaggagactgcatgaatcaggccttcatggtcaaattgctgtaaagaaaccactactaaaggacaccaataagaagaagagacttgcttgggccaagaaacaagagcaatggacattagaccagtggaaattggtcctttggtctaatggagtccaaatttgagatttttggttccaaccgtgtctttgtaggtgaatggatgatctcggcatgtgtggttcccaccgtgaagcatggaggtggtggtgtgacggcatgggggtgctttgctggtgacactgtcagtgttttatttagaattcaaggcacacttaaccacagcattctgcagcgatactccatcccgtctgctttgcgcttagtgggactataatctgtttttcaacaggacaatgacccaacacacctccaggttgcgtaagggctatttgaccaaggaaagtgatggagtgctgcatcagatgacctggcctccacaatcacccgatcttaacccaattgaaatggtttggaatgagttggaacgcagagtgaaggaaaagcagccaacaaatgctcaacatatgtgggaaatcattcaagacggttggaaaagcattccaggtgaagctggttgagagaatgccaagagtgtgcaagctgtcaaggcaacgggtggctactttgaacactttttttggttactacaagattccacaggtgttatttcatagtttggatgtctccactactattctacaatgtaaaaaaaatacaaataaaaacccttgaatgagtaggtttgtccaaacttgactggtactgtatagacaatatggacactatatggatagaatatgtagtttACCTGAATACATGTGCACGTGAAGCAACAGTTAAATAGgataggccttgactagaatacagatatgaagtgggtaaaacagtatgtaaacagtatttaaatgaccagtgttccatagggcagcagcctctaaggtgcatggtagagtaactgggtggtagccgtctagtgacagtgactaaagtACAGGGCACGCTACTGGGCAGGGGCCGGCTAGTGGTCACTGCTTtacgtgtgtgtatctgtgtgtctcgctctgtaCACAAACAAATGTAATGCTGACAACCAcaacaccacagaccaacaatgACGCACAACATCTACATGCAAACACATACTGCCCCCCTTCATAAACACTGGACATGGATGCAAAAGACAGGCTCTTTCTATGCCAGTTTTGAAGGTAAAACCAAACAAACATAATCCACTTGAATAACCCAAAATAATTAATTTACCTCGTCTCCTCCCATAATTCCTTGCTGCATGTAAAAACAAGACAGGTGAACAAAGGGATGCATAGAACATCAACAGTTTCATTGAAATGCTAATTCTTTCAGTCACAACACATGCCCTTCTCCTTTGCAGTCAAATCCTACACGTGATTAGTGCTCTATTGCCTCCTCAGTGCCCAGCAGTACATGGCAGACAGAGCCAGAGGATGCCCTTGTGTCATGAGGAACCACTCTCTTCCATGGGTCAGATGGCGAGCAGCTCTTCAGGAAGTCAGTGGAGGGTGGTTTTACACGCTCTCTGATACACGCGTGTGCATTCCACAGAGTAACTACCAGCTGGTGTGAACGCCTCAAAGACTAGTACTCTCTGAATGGTATCTATGCAGGACCACCATCTGTACAGTTTGATCACTGTCTGACCATATGACCGAGCAATATAGGCTAACACTATGAGACTCAGGGAGAGACTCCATGGTGGATCACTGGGCTCTCAGTTGCACGTCGGCTTATGCATATCAAAATGCAGTTGAGGAAGCTGtatgttacatttttttaaatgaacatgTCACTATCTTCAGGCAATAGGGTTTTATTCTCAAGTAAGAACACAAATGGTGAGCTTAGTTCTTTCATTGCATAGCTAGGCAAATTAGAGGTCTGGCTGAATGCAAATAGCATAGCCTctggccttatcacatgtaaaatatataaaataatatctTGCCTATGCAATGAAAGAACTAAGCTCCCCATTCGTGTTCTTACTTGAGAATGAAACCCATTGCCTAGGGATGGTGACATGTTCATTTCAAAAATATAACATACAGCTTCCTCAACTGTATTTTGATATGCATAAGCCAACGTGCAACTGAGAGCCCAGAGATCCACCGGAGTCTCTCCGAGTCTCAGAACATGATTTAAAAGCAGGAAttagaatgacaaagctgtacaacattatcctaaatataaaccatcaacttagtgaattcCACTGCTGTTAAATATGAGGGACTCTGTATGAAATGTCCTTTATCACTAATGTTTAATAACACCCTTATTATTTGACTAAGTCAATatgtctttgttgtaaatgtGTTGGCGCCAAACTTGTGGCAGTTTTGAAAAAGAGTCAATAGctggaagagttgcagagttaatagaaaataatgccattgttgattagatgccaTTTCATTGATTAGGCTATTCTCTCTTGAACCATATgatctatctactagaaactcatggacaatgtGGTAGAATATAAAAAAATGAATACTatgacatttttgttgttgtactacCCCTTTTTtgccccaatttcgtgatatcaattggtagttacagtcttgtccgatcgctgcaactcccgttacaggactcgggagaggcgaaggtcgagatcCTGCCAAACCGCaccgcttcttgacacactgctcacttaacccggaagccagccgcaccaatgtgtcgggggaAAACACTGTCCaactggcaaccgtgtcagcatgcatgcgcccgGCACACCACAGGAATCGCTAGAGCGGGATAGGACATCTCGGCCGACCAAACCCTCTCCCGGACCAAATTGTGCCCCGCCTTATGGTTCTCCAGGTCAGGCCGGGTGGCTGCGGCACAGCCCGGGATAGAACCCGGATCTGttgtgacgcctcaagcactgcgatgcagtgccttagaccgttgcaccactcgggaggcttatgaatacattttttttaagttaTTCTAGTAAAAATTACAATAAATgatctgttaattaccaaaaagATCCAAGATTGCAGTAGATTTGGTCAATTAGGATTGGAAACCTACGGTAGACTATCACTATTCAATGAATCTGACATCcagagcaaaaaaaataaaaatagattcAGTTCTGGGGGAGACGTGTTAGAAAAGATACTAGAATGAGGAGCGGTAGGGGAACGAGGAGCTCCACCCCCTCTTTTTTTGGAAGTTACAGGCAAGTCTACGGGCCAAATGTCCCCATCCCATCCAAAATTTAAATGATGCTTACATCTGCGAAATTGTGATTTGTTGTAATTACCAGTGCTGAAAAATCTACACACCTGGTTGCAATCCATAGTCTGTTGACAGATGGTACAACACCAGTAATTCTACGTGTatctgtccacaagagattacTATTCAATAAATCCACATCAATCATTTAAAGAACTAATGGCATAAGAATCGTCCACAGAGCAGCAAACCCACACTGGTGCCTCAAGAGCACGCCAAGCACAAACATGACTACTGACTACGTTAACATATGGCTTGtttcaccctccatccctccatcagcaTGGGTAAAGCCATCAGATCACTAGTGCTATAAAAGCATTTACATTTCATTTACGGGCAAAGGACTATCTCCTCGTGGATGTGTGAATCCTAGGCGACCTAGTGAGAGGAAACAGAGTATAAATCATTAAGAGATTCAGTTACAAGCATACGCTGCAATACACAAACTGAGCCGTTACATTAGCCCACGTAGTCCGTCGCCCAGCCGCCTGCTCGCTGGCACCTCATACAATTTACACTGAGCCATTTGCGCACACCCTGTTCCTCCCatgacctcctgccaaatgtacttGAGTGTTGAACTGTGCCATGCTGGGATGCCTTGGTGAAGGGGATAATGAGAGGGAAAAAACTCGTAATAGTAAACCCATTGTGACTGGTGTGGACCGGAGCCATGTATTTAGAGAGAGTTGGGCCATTGAGGTTTCAGCGTTgatgcatttacatgacactcaacattctatggcagccatgtcaaCGCCCCATATGCATTACATGGGAATATTTAATGTCTAGAATTGGAACAATATTTTGCTTTGTTTGTTTGACCAACTCTCTATATACATGGCTCCTGTGTGGACCAGATGAGAGTGCCGTGATTGGTGAAATCCGTTCCGTCACACAAATTCTCTaagcccctcccctccctccacctattcaatcaaagagagagaacaggctgGTGGACAGGCTCAGCAGTCAATGGTGACACAGAGCCAACACACCATTTTGTAACTTCTCAGAGAACAGAGTGCTCTTTTTAGTCGCAGAGGACAATGCTGGAATCGATTCAAAGCCACTTCTACAGTCCATTTTTCCTCCTCTTTCCTTTTAATCTGTTCTACAGAGGTCCACGTTTGACGGTCAGATCATTCTTTTCAATTAGGGATAGGCGGGCCGGGGCGCTGCTTTGGTACCCTTGGAGCTCACCCAAAGCGACCCAGTAAGGTCAGGACACAGCCGGAGTAGGGCCTGCATCTGTGTGGATCTTTCTAATGTAGAAACACATTGCCCTGGAGACAGTGGCAaggaactgctgctgctgctgctcacaaGGCAAATGATGCATCATAATGATGTTTTTCTCTGCCTTCTGTAGCTGGCACGCAGCACTGGGAGCGTCATTCCAATAATCAGCAAAGGCACAAACTAGATTGGAGAACATCAGAGGCAGAGAGCCTGAAGTCATGAGCTGTTGTGTGTGACACAAAGTTGTTGACTTTCACTGTGTGGTTTAACAGCTCAATACAGAGGTGTAAAAATGAATACACGCTACGGAAGAGATAAACATTAGAAACCCATGCCTAAGCTACTCCCTCTAACCAACCGTGACCCAGTCTGTCCTTTCCCAAACATAACAGAGTAGCCTAGGTGTAAAGTAGATCGTCCTCACTGACTAACAACAGGAACGTTCCGGTTTGCAATGTTTGCGTCACAAACCAGACGGACAGACTATAGAGACCATCGCAAGCGTTTAATTTACATGCcccataaaatatatatatcttttttttactCTGCGAAATCAACAAACCCTTCACTAGCTGCAGCTATGAAAATACCTCCCACACAACCAGCACCTAACCTCAAACACGACCTCTAAACGCCTCACTTTACATCATAAAACGATTCAAAAATCCAGACAGTTTTATTAGTGGTGGAGTCCCTTTCCTCCACGTCACAACATCCCCACCCTCCACATCCTGGATCAGCCTGACTAATCCTGAGGAAGCCTTGCATCACGGAGAGGGCCTGTCAGCACACCCAGCACAAGTGCTCCATGGCTGGGCCAGGGAAAGAGGCACCTGTGCAGGTCCACTCCATCAGAGGTGCTGGCATTTATGGGTCAGTGTAGCTGCTGCTAACACCAGTCTGCTGCGCCACGGCATGGTACGTGTGCAGCCGCACAGCTCTAATGGACCTAAGTTGGGGAGCTGCTCAAAATCCATCTGCAACGACCTCAAAAATGGGGAACTACAGGCAACTATGAAGGAAGAGTTGGGAAGGAAAACCTCGTCTCGTCAGTGATTATCTCTGCATGTCTGTTCCATTTGACTTCACACCTGAAATGATGGGACTTTCGTACCTTATACAATGCAAAGTTGAGAGGTCTAGTGGGGACCGTGGCATTGCAACATAACGGTTTAATTAGAGGAAGGAATCGATGCAAACACGTTTGTTTTCCATTGTAAATTAGCATGTGCTGCTGATGGAGCTTACGAGCCTATGAGCTTATGAGCCTCTCTGACCTggatctgtgtgtggtgtgtgaatgtgtatgggTAAGTAGGCACCTGAGCTGAGCCGTGAGAGAAACAACCACCCCCACTATcagctcggggggggggggggggggggggcTGGCCGGGGACCTTCGGTGCTGTTGGTGCTGGTTGTGGGGATGCTGAAAGTGGGGGTGTGGGGGATGGTGCTGGGAGATGGGTCCAATCTGGGGAGAGAAGTTTCCCCCGAAGCCTGGGCTGACGTGGTGGGAGAAATTCTGGAACAGGAGGGGCCCGTTGTTAGCAGAGGCAGCTGGGTTAAAGAAGCTGACATCCTCATTGATGATGGTGGAGGGGGTCTGGGAAATAGCAGCTGACCAGTTGTTGAAGCCAGTCAGGGACGAGGAGGTACTGGACTGGCACGGAGTCCCAAGACCTGATGTCTCTTGGTAGTCGAAGCCTGTCAGTACTGGGGACTCGAGGCGCAGCTTCTCTTTTCCATTGCTACCCTCAGAGAGGCCGCCCTCCACCTTGTTCTCCTCTGACCTCGCCTTCTCTAACTCAGATACGATTCCAGACTCCGGGTGGCCAGGGGATAGTAGCTGTTTTTCTTGCGTTTCTTGCATTTCCTGTTGCTGGGCTTTGGGCTTTTCTGACCCAAGAATTTCATCTTGCATGCTGCTGTGGGCAGCTGTGGCTGAAAACAGCCAAGGTGACCCATTGTTACTGCCATTGCCAGCTGTGGTACTGTTTATAAAAGCACCAGGGCTTTGAGACGCATTCTGATGATGGTGTGGAGGTTGCAGATGTGGATGAATTCTAACTGGGAAAGCAGACTTGTTGCCAGTGTTATTTTGCACTAAGACTCCAAACCCGTAATCCCCcatttgttttcccacacacaATATCTGCTATCCCTTGATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1237636 lncRNA upstream 1859 54158789 ~ 54164032 (+) True G1087944
TU1237409 lncRNA upstream 295676 53869766 ~ 53870215 (+) True G1087730
TU1237400 lncRNA upstream 306055 53859634 ~ 53859836 (+) True G1087721
TU1237358 lncRNA upstream 337278 53828413 ~ 53828613 (+) True G1087681
TU1237342 lncRNA upstream 339689 53825999 ~ 53826202 (+) True G1087665
TU1237647 lncRNA downstream 3796 54186181 ~ 54186467 (+) True G1087954
TU1237653 lncRNA downstream 11717 54194102 ~ 54194307 (+) True G1087960
TU1237654 lncRNA downstream 12256 54194641 ~ 54194909 (+) True G1087961
TU1237661 lncRNA downstream 19925 54202310 ~ 54202561 (+) True G1087967
TU1237679 lncRNA downstream 56715 54239100 ~ 54239333 (+) True G1087985
XM_021624157.2 mRNA upstream 360983 53801662 ~ 53804908 (+) True LOC100301661
XM_021624154.2 mRNA upstream 473261 53690304 ~ 53692630 (+) True LOC110537776
XM_021624152.2 mRNA upstream 484760 53662526 ~ 53681131 (+) False LOC110537774
XM_036939510.1 mRNA downstream 71334 54253719 ~ 54280957 (+) False LOC110538908
XM_036937799.1 mRNA downstream 176888 54359273 ~ 54460602 (+) False ppp2r2bb
XM_036937801.1 mRNA downstream 222405 54404790 ~ 54460602 (+) False ppp2r2bb
XM_036937802.1 mRNA downstream 257501 54439886 ~ 54460602 (+) True ppp2r2bb
XM_021624177.2 mRNA downstream 697288 54879673 ~ 54888634 (+) False LOC110537791
TU1237606 other upstream 16929 54109690 ~ 54148962 (+) True G1087914
TU1235839 other upstream 1508396 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 4485087 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 4865544 49291405 ~ 49300347 (+) True LOC110537713
TU1231375 other upstream 4874622 49277152 ~ 49291269 (+) False LOC110537713
TU1237658 other downstream 91921 54274306 ~ 54280721 (+) True LOC110538908
TU1241153 other downstream 2543222 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 2570033 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 2933440 57115825 ~ 57117927 (+) True LOC110537831
TU1241907 other downstream 3717086 57899471 ~ 57914832 (+) True LOC110537841

Expression Profile