RNA id: TU1243653


Basic Information

Item Value
RNA id TU1243653
length 211
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1093541
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58672342 ~ 58672552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactagttaactacacatggttgatgatattactagtttttctagcttgtcctgcgttgcatataatcgatgcggtgcctgttaatttatcattgaatcacagcctacttcgccaaacgggtgatgatttaacaagagcattcgtgaaaaaagaactgtcgttgcaccaatgtttacctaaccataaacatcaaagcctttcttaaaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1243649 lncRNA upstream 1627 58670410 ~ 58670715 (+) True G1093537
TU1243632 lncRNA upstream 10490 58661585 ~ 58661852 (+) True G1093520
TU1243532 lncRNA upstream 19960 58652159 ~ 58652382 (+) True G1093425
TU1243522 lncRNA upstream 34200 58637821 ~ 58638142 (+) True G1093415
TU1243518 lncRNA upstream 39524 58632588 ~ 58632818 (+) True G1093411
TU1243656 lncRNA downstream 2027 58674579 ~ 58674807 (+) True G1093544
TU1243708 lncRNA downstream 74086 58746638 ~ 58827450 (+) False LOC110538919
TU1243706 lncRNA downstream 145245 58817797 ~ 58827450 (+) False LOC110538919
TU1243722 lncRNA downstream 150375 58822927 ~ 58827450 (+) False LOC110538919
TU1243697 lncRNA downstream 152361 58824913 ~ 58827450 (+) True LOC110538919
XM_021624297.2 mRNA upstream 47885 58575601 ~ 58624457 (+) False rab28
XM_036937889.1 mRNA upstream 47885 58575609 ~ 58624457 (+) False rab28
LOC110538918 mRNA upstream 125745 58545146 ~ 58546597 (+) True LOC110538918
LOC110539153 mRNA upstream 142123 58528290 ~ 58530219 (+) True LOC110539153
XM_021624273.2 mRNA upstream 385714 58274018 ~ 58286628 (+) True LOC110537848
XM_036937892.1 mRNA downstream 18565 58691117 ~ 58824569 (+) False LOC110538919
XM_036937893.1 mRNA downstream 18565 58691117 ~ 58824569 (+) False LOC110538919
XM_036937895.1 mRNA downstream 18565 58691117 ~ 58824569 (+) False LOC110538919
XM_036937899.1 mRNA downstream 18565 58691117 ~ 58824571 (+) False LOC110538919
XM_036937894.1 mRNA downstream 18566 58691118 ~ 58824566 (+) False LOC110538919
TU1241903 other upstream 450152 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 757510 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 1554415 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 1919395 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 1946339 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 869006 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 1358451 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 1713112 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 2024135 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 2143939 60816491 ~ 60818897 (+) True G1095209

Expression Profile