RNA id: TU1243656


Basic Information

Item Value
RNA id TU1243656
length 229
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1093544
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58674579 ~ 58674807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctcatgctttcgccaaaaagcattttacaaatctgacttggtggctagattcacaacgagtgtagctttaattcagtaccttgcatgtgtatttttatgaaagtttgagatttatcgagtactacactcgagtactataggtggcgctctgaaatttccgctgagctgtccctgtgcagggaccacctccgtAACAAgctagagcagttttgccttgaagaatgggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1243653 lncRNA upstream 2027 58672342 ~ 58672552 (+) True G1093541
TU1243649 lncRNA upstream 3864 58670410 ~ 58670715 (+) True G1093537
TU1243632 lncRNA upstream 12727 58661585 ~ 58661852 (+) True G1093520
TU1243532 lncRNA upstream 22197 58652159 ~ 58652382 (+) True G1093425
TU1243522 lncRNA upstream 36437 58637821 ~ 58638142 (+) True G1093415
TU1243708 lncRNA downstream 71831 58746638 ~ 58827450 (+) False LOC110538919
TU1243706 lncRNA downstream 142990 58817797 ~ 58827450 (+) False LOC110538919
TU1243722 lncRNA downstream 148120 58822927 ~ 58827450 (+) False LOC110538919
TU1243697 lncRNA downstream 150106 58824913 ~ 58827450 (+) True LOC110538919
TU1243850 lncRNA downstream 215815 58890622 ~ 58890896 (+) True G1093678
XM_021624297.2 mRNA upstream 50122 58575601 ~ 58624457 (+) False rab28
XM_036937889.1 mRNA upstream 50122 58575609 ~ 58624457 (+) False rab28
LOC110538918 mRNA upstream 127982 58545146 ~ 58546597 (+) True LOC110538918
LOC110539153 mRNA upstream 144360 58528290 ~ 58530219 (+) True LOC110539153
XM_021624273.2 mRNA upstream 387951 58274018 ~ 58286628 (+) True LOC110537848
XM_036937892.1 mRNA downstream 16310 58691117 ~ 58824569 (+) False LOC110538919
XM_036937893.1 mRNA downstream 16310 58691117 ~ 58824569 (+) False LOC110538919
XM_036937895.1 mRNA downstream 16310 58691117 ~ 58824569 (+) False LOC110538919
XM_036937899.1 mRNA downstream 16310 58691117 ~ 58824571 (+) False LOC110538919
XM_036937894.1 mRNA downstream 16311 58691118 ~ 58824566 (+) False LOC110538919
TU1241903 other upstream 452389 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 759747 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 1556652 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 1921632 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 1948576 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 866751 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 1356196 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 1710857 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 2021880 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 2141684 60816491 ~ 60818897 (+) True G1095209

Expression Profile