RNA id: TCONS_00042832


Basic Information

Item Value
RNA id TCONS_00042832
length 663
RNA type mRNA
GC content 0.55
exon number 1
gene id XLOC_021574
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17354154 ~ 17385249 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCAACCACCACATCCATCCTCTCATCGTCTTCAAGTCTCGTTGAACAATCCAGCATGTCTTTTCCGCATACCTTGATCCATCCTGAAGCAGAACCGGTTTCACCTGATCCTCCGCTATGATCGCAGCAGCCCGTGCTTTAGCTCAACAAAGGCGATCCTGGTACAGAGTCAGTCGGTCACCCTCGGTGAGAGACCCACACGCCTCTTTAATTTTGCTCTCAACCCGTTTCGCTCGGTGGACGGCGGCCAAATATTCTGGCTACGCTGGAGTCCGTGGAGAGAGCGCGCTGGGATGGAGACGTGCTGTCGCTGCTGTATGCCATGCCTGAAGCGGTTATGGGACAGCATATGGCCCGAAAACTATCCGAACCTCCATCGTCCGGACGACATTCGTACCGTTTCAGGTGATATCCGGGTCCCGGCGCCCAAGAAGAAGCCCGCGCAGCTGTACGCGGCTCTGTTCGACTTTGTAGCCCGCAGTGAGGAAGAGCTGTCGGTGAAGGAAGGGGACAAACTGTCAGTCATAGAAAAGAGGGGAGATTATGTGTTCGCCAAGAAGCTGACGGGGTCCCTGGAGTCCGGACTGATCCCTGCCAATTATGTGGCCCTCTTGAAAGACGAATTCGCTAACTACAAGTAAGTGCTGTGCGTGACTATAGCGA

Function

GO: NA

KEGG:

id description
ko01001 Protein kinases

Ensembl:

ensembl_id ENSDART00000189467

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044668 lncRNA upstream 100194 17254498 ~ 17254757 (+) True XLOC_021573
TCONS_00044804 lncRNA upstream 143677 17146315 ~ 17211274 (+) False XLOC_021571
TCONS_00044803 lncRNA upstream 453715 16889209 ~ 16901236 (+) False XLOC_021567
TCONS_00042815 lncRNA upstream 456161 16889209 ~ 16898790 (+) False XLOC_021567
TCONS_00044805 lncRNA downstream 56912 17412525 ~ 17421436 (+) False XLOC_021576
TCONS_00044806 lncRNA downstream 117506 17473119 ~ 17477448 (+) True XLOC_021578
TCONS_00042840 lncRNA downstream 187106 17542719 ~ 17546078 (+) False XLOC_021580
TCONS_00044807 lncRNA downstream 191499 17547112 ~ 17550653 (+) True XLOC_021580
TCONS_00042841 lncRNA downstream 301223 17656836 ~ 17659102 (+) True XLOC_021581
TCONS_00042830 mRNA upstream 8696 17220986 ~ 17346255 (+) True XLOC_021572
TCONS_00042826 mRNA upstream 240859 17102960 ~ 17114092 (+) True XLOC_021570
TCONS_00042825 mRNA upstream 401715 16948049 ~ 16953236 (+) True XLOC_021569
TCONS_00042823 mRNA upstream 416548 16935494 ~ 16938403 (+) False XLOC_021568
TCONS_00042822 mRNA upstream 417502 16928511 ~ 16937449 (+) False XLOC_021568
TCONS_00042833 mRNA downstream 31712 17387325 ~ 17404011 (+) True XLOC_021575
TCONS_00042834 mRNA downstream 61926 17417539 ~ 17447163 (+) True XLOC_021576
TCONS_00042835 mRNA downstream 81941 17437554 ~ 17465232 (+) True XLOC_021577
TCONS_00042837 mRNA downstream 154181 17509794 ~ 17520775 (+) False XLOC_021580
TCONS_00042838 mRNA downstream 156424 17512037 ~ 17523384 (+) False XLOC_021580
TCONS_00042829 other upstream 143145 17187884 ~ 17211806 (+) True XLOC_021571
TCONS_00042828 other upstream 143677 17146561 ~ 17211274 (+) False XLOC_021571
TCONS_00042827 other upstream 207960 17146315 ~ 17146991 (+) False XLOC_021571
TCONS_00042824 other upstream 409510 16937629 ~ 16945441 (+) True XLOC_021568
TCONS_00042818 other upstream 453945 16898325 ~ 16901006 (+) False XLOC_021567
TCONS_00042836 other downstream 145701 17501314 ~ 17501428 (+) True XLOC_021579
TCONS_00042843 other downstream 427800 17783413 ~ 17783541 (+) True XLOC_021584
TCONS_00042853 other downstream 517913 17873526 ~ 17873598 (+) True XLOC_021588
TCONS_00042854 other downstream 518459 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042869 other downstream 933461 18289074 ~ 18289201 (+) True XLOC_021598

Expression Profile

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