RNA id: TCONS_00043413


Basic Information

Item Value
RNA id TCONS_00043413
length 4513
RNA type mRNA
GC content 0.47
exon number 23
gene id XLOC_021921
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39461989 ~ 39528988 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCATCTAGAAGGCTCCAGGCCTGTCTCTTCACAATGGTCAACCCGCTGGACTCAGTCAACCCCAGCCATGCTCTGTTTGAGGGCTTTGTCCAGGCGCAGACATGTAAAGAGACGCAGCAAAACTTCACCGAGCTCTGCCGCCACCTGCAGGTCGACCCCAAAGACTACAAGCACTTCTACAGCAAACTGAAGGACAGACTGAACTACTGGAAGGCCAAAGACCTCTGGCAGAAGATCGACAAGAGAGCCGCTCATCCCGACTATGACCAGGGAAAAGCATGTCACCAAAACAAGTGTTTGGTGTTGGGCGCGGGTCCCTGTGGTCTCAGGACAGCCATTGAATTGGCTCTGCTTGGCGCTCAGGTTGTTGTTCTGGAGAAAAGATCATCTTTCACGAGGAATAATGTCCTGCATTTGTGGCCCTTCACCATTAAAGACCTTCTCAACCTCGGGGCAAAGAAATTTTATGGCCGATTCTGCAGTGGCTCCATCCATCACATAAGTATCCGTCAGCTGCAGTTGATTCTGCTGAAAGTGGCTCTGTTTTTGGGGGTGGAGGTTCACACTGGTGTGGCTTTTGAAGGTCTAAATGAACCATCAGGATCTGCAGgATGGAGAGCAAATGTGTCTCCAAAGTCCCACCCAGTTGCAGATTTTCAGTTTGATGTGTTTATTTCAGCCGGAGGGGGGAAATATGTGCCTGATGGTTTTAAGATAAAGGAGCTCCGAGGAAAGCTGGCTATTGGTATCACTGCAAACTTTGTAAACCGTCACACTAAACAAGAGGCTCAGGTGCAGGAGATCAGCGGTGTGGCCCGAATTTACAACCAGCAGTTTTTCCAGGCTCTTCAGTCTGAGATTGgcGTTGATCTAGAAAACATTGTCTACTACAAAGACGACACCCACTATTTTGTGATGACTGCAAAAAAGGCCAGCTTGTTAAAGAAAGGAGTCATAAAGCAGGATTTCTCTGATGCCGATAAGCTCCTGGCTCCCTCAAATGTGAATCAGGAGGCACTGCAGGATTACGCATTCGAAGCATGTGATTTCTCCACAGAGCACTTGCTGCCCAACCTGGAATTCGCCAAGAACCACAAAGGCCAAGCGGACGTGGCCATGTTTGACTTTACCTGCATGCAGAGGGCAGAGAGCGCCTCTCTGGTGAAGGAGAGGAATGGCAAGAGGCTGCTCATCGGGCTGGTGGGAGATTCTCTGGTAGAGCCTTTTTGGCCTTTGGGCACTGGCATTGCTCGTGGTTTTCTGGGTGCGTTTGATGCAGCGTGGATGGTCAGGAGTTGGGGAAAAGGTGTGCAGCCCATGGAGGTTCTGGCAGAGAGGGAAAGTGTGTATCAGTTGCTTTCTCAAACAACTCCAGAAAACACCAGCAAGAACTACATGGCCTACAGCATTGATCCAAGCACACGATACCCGAACATCAACCTGTCCTCCATCAAACCCAGACAGGTCAAGCGTCTGTATGAAGCAGAAGAGCAGGAAAGCAAACCAAACAAACTGAAGAAACCTGACATAAAAGCTAAACCTAGAAAAGacTCTATGAAGCGTCTGGAGGAGCTGTTGTCCTGGTGTCAGAAGAATACAGTGGGATACGAGCATGTGAAGGTCAAAGATCTGAGCGAGTCTTGGAGGTCTGGTCTGGCTCTCTGTGCTCTCATCCACAGCTTCAGACCTGAGCTTGTTGACATGTCGGCTCTGGATGAGTATAATATCATCAAGAACAATAAGTTGGCTTTTGATCTGATGGAGAAAGAGTTCGGCATCACCCCCATCATGCGGCCCGGCGATATGATGACCTGTGGTAAAATCGACCAGCTGTCCATGGTGGTTTACCTCACACAGATACGCAACGCTCTTACTGAGAAAGACACACCAGCAGCGCAGTCCAACACACTCTCCCTGTCCAGAAAGCGTTCAGCCGTTGCCTTCCTCAACACACTCAAACGCAACTCTCTGCAAAGACATAAGGATCGACTGGCATCCGTGAAAGGACCAAGACAGCAAAACATGAAGGAGAAAGAAGAGAAGAAGGATGTGAAAGAGGAAAGTCTCTCCTCAGAGACGAGTGCATGTGAACCCTGTTATTTCTGCAAGAAGCATCTGTATGTGGTGGAGAGAGAAAGTGCAGAGGGAAAGTTCTTCCATCGCAGCTGCTTCAACTGTTTTCAGTGCGGCTCCACTCTGCGGCAGGGCGGATACTCTTTTCACTCTGACAATGGGAGGTTTTACTGCGAGCTGCACTCACTGgctgaggaagaggagggtgaTGAAGGTCATGGAGGCGCACAGAATCATACTGAGAACGGAAGTAAGGAGGACAAAAATGGAGAAACAACAGCGGCTTCATCCCCACCTGCGCATCTCTCAATAAAGCGTAAGGGCTCGTACAAGATCTCTGTTGACCCTGACTTTGATGAATCAACTGAGTTTCCTGCTCCAGACCAAGATGAACCACCTGATCTTGAGGAGTCCCATCAACCTCCCAAACCTTCAGAGCTCAGTGCGGAAAACACAAACATGGAAAACCAACAACACAACATCAATCCAGTTCCTGCCCCGCGTGGCTCCAGAGCTCCGCTCCCGAAACCTCGCACTGTCCATAATGTGGTGCACGAACCCTGTAATATTCCAGAGGAAGCAGAGCAGATTCCTGAGGAGCCCAAACCCAAACCGTCCCTGCGCAAACTCCAGCAGAGCGAAGAGGAGAAGGTGGATCTGTTGAGCCAGGATTCAGACTCTGAGACACGGGGCTCGTCTTCTGCCGCCTCCACCTCCTCCTCATCCAAACAGCATGAAGAGGAGGGCTACTGGAGCGGAGGCACGACGTGGGGGAAGAGCCATCGTGAGCAACGAAACCGCCCCTGCATAAGGAGGAAGAGTGAACCTCCGCTGCCGCTGACTGGCCATTCTCAGCACGGAAAGATGCGCTCCAAGTTTTCCCCGTGGAATCTGTCTTCACCGCGGCTCCAGCAGCGATTCAGCGTTCACAGAGTTCCTGCAGGTCAAAGTCAGCCAGATCAGTATGTATCAGAAGATGataatgaagatgatgaagatgaggatgaagaGGACCTTCAGGCTGAACATTATTTGGATTGCGAGGGAGCTGATTTTGAATTTTCGGATTCAGAGAAACGCAACTTAAAGAGGATGAAAACTCTGGAGCGGAAAGCAAAAATGACTGAAATCCAGCGTTTCCACAAAGCTCAGTCGATTCAGAGACGTCTGGAAGAGATCGAAGTGACCTTTAAAGAGCTGGAGGAGAAAGGAGTGGAGCTGGAGCGAGCTCTGAGAGGAGAGACGGgtACAGGTGACCCTGAAATCATTGATCAGTGGATTGAACTGGTCCAGGAGAAAAACAACCTGCTGTCAGAGGAGTCTGATCTCATGGTGGCGTCTCGACAGCTGGAGCTGGAGGACAAACAGAGCATGCTGGAGATGGAGCTGCGCCGCTACATGGAAATGGATGaTTCAGAGAAAAGCCCTGAGCAGCAAAAGCACGAGGCAGAGATCCTGCAGGAGATGCTGGACGTGGTAGACATGAGGGATTCACTGGTGGCCTTTCTGGAGGAGAAGAGGCTGAAGGAGGTCAATGATCAATTTAATTCAAGCCTGGATGCCAAAAGACGTTCAACCACAGCCTCCCAGGTGCACTGGGAGTAAaacgacacacaaacacacacatctactGGCTTAAAATACACACCACAACACCTTAATGAAGTTGTTCATCTGACAGTTACAATTCTGGCATCATTTATACACTCTCATGTCATATAAAGTCCATATAAATTTCTATCTTCTGTGATATTATAAGAAAAACACACTGCTAGATAATAAAGTTTGAGGTAAGAGTGAACAAAAAGTCCAAATTGTGTAGAGAActtcaaaattattaaaaattgcaCTAGATAAACTTAGAATCATGAAAAGGTTTAAAATTGCATCAAATAAATCCGCAAAAATTCTTTATTTCCAACATCTCAAAAAAGCCTaatcaaggaaaaaaaaagagagtaatAGATGTTATAATTATCAGTTACAAGAACAGAACTATGAGATGTATACTATGAGAATTGCAACGTCAAAGGTCTGAAttgcaaaatattatatatatttaaagaaaatagatCCTATGTCCTCAGAACAAAAGTTAAAATTGCAAGATGTGTAAAATCCTAATAAATGTCaaccaaatataataaaaatattaactatgACAAACTAAAATTTGAAATCTGAGGGGAAAAGtcaatattgtaaaatgtaaatttaaaatctTGAAAACAGTGCAAAATCGTATGATGTAAACATAAATCTAAAGTTAGATATGAAATTAAAAGTTAGAATTGTGATTGTGGAACAGTCAATCCTCTCAAACCTGTCTGGGTCCAGTCAGAACAACTGGGAGGCTTGTTAAGACTTGGTCCGAAAAAAAATGATGGTGCACCCAGGAAAGCACGTCGgtgatgttttttttacagtgcccTAGAATCC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0019417 sulfur oxidation biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0071949 FAD binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-3 Predicted to enable FAD binding activity; actin binding activity; and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen. Predicted to be involved in actin filament depolymerization and sulfur oxidation. Predicted to be located in cytoplasm. Orthologous to human MICAL1 (microtubule associated monooxygenase, calponin and LIM domain containing 1).

Ensembl:

ensembl_id ENSDART00000187222

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043408 lncRNA upstream 55741 39347185 ~ 39425796 (+) False XLOC_021920
TCONS_00043402 lncRNA upstream 297228 39183246 ~ 39184309 (+) True XLOC_021918
TCONS_00044897 lncRNA upstream 926242 38537568 ~ 38555295 (+) True XLOC_021914
TCONS_00044693 lncRNA upstream 1184748 38266610 ~ 38296789 (+) True XLOC_021912
TCONS_00044692 lncRNA upstream 1187071 38266303 ~ 38294466 (+) False XLOC_021912
TCONS_00043420 lncRNA downstream 185661 39714649 ~ 39718834 (+) True XLOC_021925
TCONS_00044694 lncRNA downstream 223500 39752488 ~ 39752964 (+) True XLOC_021926
TCONS_00044898 lncRNA downstream 995406 40524394 ~ 40526983 (+) True XLOC_021937
TCONS_00044899 lncRNA downstream 1285755 40814743 ~ 40815221 (+) True XLOC_021940
TCONS_00044900 lncRNA downstream 1329212 40858200 ~ 40866526 (+) True XLOC_021941
TCONS_00043407 mRNA upstream 30837 39346930 ~ 39450700 (+) False XLOC_021920
TCONS_00043406 mRNA upstream 31572 39346774 ~ 39449965 (+) False XLOC_021920
TCONS_00043409 mRNA upstream 31572 39413163 ~ 39449965 (+) True XLOC_021920
TCONS_00043405 mRNA upstream 148224 39331216 ~ 39333313 (+) True XLOC_021919
TCONS_00043404 mRNA upstream 148225 39281229 ~ 39333312 (+) False XLOC_021919
TCONS_00043414 mRNA downstream 29520 39558508 ~ 39597901 (+) True XLOC_021922
TCONS_00043415 mRNA downstream 77120 39606108 ~ 39607679 (+) True XLOC_021923
TCONS_00043416 mRNA downstream 82700 39611688 ~ 39626681 (+) True XLOC_021924
TCONS_00043418 mRNA downstream 166839 39695827 ~ 39727347 (+) False XLOC_021925
TCONS_00043417 mRNA downstream 166839 39695827 ~ 39727347 (+) False XLOC_021925
TCONS_00043391 other upstream 1145653 38335760 ~ 38335884 (+) True XLOC_021913
TCONS_00043382 other upstream 1386977 38092005 ~ 38094560 (+) False XLOC_021909
TCONS_00043383 other upstream 1387373 38092010 ~ 38094164 (+) False XLOC_021909
TCONS_00043378 other upstream 1626915 37851830 ~ 37854622 (+) True XLOC_021906
TCONS_00043376 other upstream 1713381 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043431 other downstream 777256 40306244 ~ 40306371 (+) True XLOC_021932
TCONS_00043437 other downstream 937514 40466502 ~ 40472088 (+) True XLOC_021935
TCONS_00043438 other downstream 948232 40477220 ~ 40480582 (+) True XLOC_021936
TCONS_00043441 other downstream 1223716 40752704 ~ 40752818 (+) True XLOC_021939
TCONS_00043458 other downstream 2662251 42191239 ~ 42191353 (+) True XLOC_021959

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_00538192_00559082.mRNA False 3906 mRNA 0.49 19 CI01000001 537593 ~ 559082 (-)