RNA id: TCONS_00043423


Basic Information

Item Value
RNA id TCONS_00043423
length 3074
RNA type mRNA
GC content 0.49
exon number 19
gene id XLOC_021927
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39854566 ~ 39941025 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGTCGGTGAAATGGCGGAGCGGGATGGAAGCGACGTCTGTCAGAGTTCCAGCCAAGGCTCTGACTACCTTCTCAGGGCAGATGAAAAGTCATCATGGAGTCGACCAGACTCATCTGCCTCTGGACAGTACACCTACACTATCCCCAGCCCCACAGAGATACACACCGTTACCAAACCAGAGCCTCTCATGCTGAAGAATGATGAACGGCAGAGACTCGCCCGCGAACGGAGGGAGGAGCTGGACAAGCAGAACGCTGTACGGGGCTCCAAGTGGCAGGAGAGAGAGGAAAGAGCCCGGCAGTTTCATGAGAGACAGCTGGAGGAGCGCAAGAAAAGGTTGGAGGAGCAGCGGATGAAGGAGGACAAGAGACGTGCTGCTGTGGAGGAAAAACGACGGCAGAAGCTGGAGGAGGAGAAGGTACGGTATGAGGCCGTTATCAGGAGGACAATGGAGAGGAGTCAAAGAGCCAGGCCTAAGTCGAATCGCTGGAGCTGGGGTGGAACACTTTCTGTTAGCACCTCACACAATAGCGATGCTGACAGAAGGTCAGTCTCCACTATGAATCTGTCCAAACACACAGATCCAGTCATTTCCAAACGCCTGTCATCGTCCTCAGCCACCTTGCTGAATTCACCAGATAGAGCCTTACGGAAGCAGACATCTTTCTCGTCGTCTTGCTTGCTTAAAAAAACACTATCTAAATCCCAAATCTCCAGAGAGAAGACCCCTCAGGACAAAACAGCAGGTATGCGTCGCATGCCCCTTACTCCATGGGAGAACACAGTGATAAGTCGATTACAGACGCCAACACACTCCTATCTGGCCAGGAGTCGCAGCGCCATGTCTTTATCTGGAGAAGCAGCTTCCTGTCACCCAATGAGCTCCATGTCCTTCAAGTCCATCCAGTCACGTAGCGCCGAACGGCCAATGAAAGCAGGCCTTAATCTGGAGAGACCAATCAGAGCAGGCTTTATTCCTCCAGATGGCAGCAATCGCAGAAAGATCACTCAGAATATCATGATTGACAGGAAGGATAAAGACAATGTGAGGAAGTCATGGAGTAACCTGTCATATCCCACTCCCAGTTTGAGTCTTTTCACACCTAAGAGAGCTCCTTCACCTGTCGGCCATCGCAGCAGGGTCACCAATCCATCCCCTAATAGGAGCTCTACTGCTAAACCCTTTCAGAAGACACCAAACCCCAAAAAGTCCAggtctcctcctcctccagcatCAATCCCGCTGTCTCATAGCAATCCGTCCTTATCGCCAGGCAATCTCAGGCCCAGCAGACCGACATCCGAGAGCCTGAGAGTTACAGCAGAAAGAGAGGCGGCCAAAAAGGAGGACGTAGAACCTCCTAAAACTGAACCGGAAGCTCCATTGACTACAACAGAGCCTAGTTCTGAAGCTTCTGGAAGTTCTCCTGGAGGCCGTCCCTCTGCAGGCACCACTGATCCAGAGGAGGCCTCTCGTCTGCTGGCTGAGAAACGACGGCAGGCCAGagaacagagagaaagagaagaagagGAGAAGAGGCAGCAGGAAGAGgctgaaagGCGCAGCAGGGAGGAAATGGCCCGCAGGAAGGCAGAAGAGCGAGCGAAGAGAGAGGAGGAGGCACAGCGGCAGGCGGAGGAGAAGAGgagaaaagaggaggaggagatgcGTTTAGAAGAGGAGAGAGCGCAGAGGGAGAGAGAAGAAGCCGAACGCCTGCAGAAACAAAAAGAGGAAGAGGAGGCTCGCCAGAAAGAAGAAGCAGAGCGCTTGCGTCTGGAGAGAGAGAAACACTTCCAGAAAGAGGAGGCTGAGAGAATGGAGAGGAAGAAACGCCTTGAGGAAATTATGAAGCGCACACGCAGATCTGATCAGAAAACCACCCCGCAGAGAAATGGAGATGTCAGTCAGCAGAGTGGACAGGATCCAGGTTCAGTGTCCGGCGGTCCCTCAGTGAGTGTGTCTGACCCTCTGGCTTCAGAGACCTTAGAGACGGTACAGAGCGACAGTAATGGACACACGGGGCCAAGCTACATTACACCTGTACTGCCCACATCAGGTCACAGCATGTCTGCACTACTCCGAGAAAACGGCACTATTAACGAGACCTTCGAGCAGGTCATAGAGGTTCCTCTGGCGAACAAACTGTCCCGTCAAGATGGAGATGGAGAAGAGCTTGacagagaggaggaggaggagaggaaaCGTCCCTTTTTGGCCTTCAGAGAGAACGGCAGCACACATAACGTGAGCGAACTGAATGAGGAGCCAACGCTGTAGAGTTCAGATGTATGAATATTTATAATGGTGGAAGTGCAACAAGCAACATAAGGAAGAGAAATACTAAGAAAATGAAGTACTTCTCTTCGTCTGAATCCAACTCAACCTAAAATGGCAAACCAAACAAAACGTCTCTTGGCCGTTCTCTTGACTTCCGGTTATCATTTTCCCCCAAAACTGAAGTGGGTCGCTCCAGAAACCACATCTTCCATCACTGGGGGAGAAaccactgaagccaaatctaatACTTGAAGAGAAATGTGCCCTCTTTCGAGGAAGCTCTTGCGAAGTGCTGACCGTAAGGAATGTGTGACTATCGAGAAAATGATGTATGTCATGTGGGCGTCACTTTACAGCAAAATCCTGTCTTTTTGCTCCCGTTAAGCCAGCAGTTTGAGTTGGCTGAACTCTCTGCTTAGTTTTATAATTGCTGTTTAAATGAAGAGAGCAttttttcttccctctttgtaaAGCTTGAACGGATTATTGCCTCTATGCATTTATGCATCTTTGGTCGCTCGGCTCATTCCACCCCAGTATAcgcagtttgagatgatttgttTTTGTCTAATAAGTTTGGGTTGTTtgaatctcaaaaaaaaaaatccatcaaatATTTAACACAAAATTAAATGGAATACATGCATGttatttatgttaaaataaagcttattttcctcaattaatcataattattatggCCTAAAATGTAGATACTGTGTAAATTGTGAAGTGTATATATGGAAAGTTACCAAATGTTCTACTGCCTTTTAATGTAAtgctgatttaaa

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0015630 microtubule cytoskeleton cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description

Ensembl:

ensembl_id ENSDART00000161881

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044694 lncRNA upstream 101632 39752488 ~ 39752964 (+) True XLOC_021926
TCONS_00043420 lncRNA upstream 135762 39714649 ~ 39718834 (+) True XLOC_021925
TCONS_00043411 lncRNA upstream 364245 39462206 ~ 39490351 (+) False XLOC_021921
TCONS_00043408 lncRNA upstream 428800 39347185 ~ 39425796 (+) False XLOC_021920
TCONS_00043402 lncRNA upstream 670287 39183246 ~ 39184309 (+) True XLOC_021918
TCONS_00044898 lncRNA downstream 583369 40524394 ~ 40526983 (+) True XLOC_021937
TCONS_00044899 lncRNA downstream 873718 40814743 ~ 40815221 (+) True XLOC_021940
TCONS_00044900 lncRNA downstream 917175 40858200 ~ 40866526 (+) True XLOC_021941
TCONS_00044695 lncRNA downstream 1064007 41005032 ~ 41019226 (+) True XLOC_021944
TCONS_00043444 lncRNA downstream 1080486 41021511 ~ 41033851 (+) False XLOC_021945
TCONS_00043418 mRNA upstream 127249 39695827 ~ 39727347 (+) False XLOC_021925
TCONS_00043417 mRNA upstream 127249 39695827 ~ 39727347 (+) False XLOC_021925
TCONS_00043419 mRNA upstream 127249 39697757 ~ 39727347 (+) False XLOC_021925
TCONS_00043416 mRNA upstream 227915 39611688 ~ 39626681 (+) True XLOC_021924
TCONS_00043415 mRNA upstream 246917 39606108 ~ 39607679 (+) True XLOC_021923
TCONS_00043424 mRNA downstream 22574 39963599 ~ 40043212 (+) False XLOC_021928
TCONS_00043425 mRNA downstream 29400 39970425 ~ 39974080 (+) True XLOC_021928
TCONS_00043426 mRNA downstream 168328 40109353 ~ 40126859 (+) True XLOC_021929
TCONS_00043427 mRNA downstream 192111 40133136 ~ 40186528 (+) False XLOC_021930
TCONS_00043428 mRNA downstream 198740 40139765 ~ 40185999 (+) True XLOC_021930
TCONS_00043391 other upstream 1518712 38335760 ~ 38335884 (+) True XLOC_021913
TCONS_00043382 other upstream 1760036 38092005 ~ 38094560 (+) False XLOC_021909
TCONS_00043383 other upstream 1760432 38092010 ~ 38094164 (+) False XLOC_021909
TCONS_00043378 other upstream 1999974 37851830 ~ 37854622 (+) True XLOC_021906
TCONS_00043376 other upstream 2086440 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043431 other downstream 365219 40306244 ~ 40306371 (+) True XLOC_021932
TCONS_00043437 other downstream 525477 40466502 ~ 40472088 (+) True XLOC_021935
TCONS_00043438 other downstream 536195 40477220 ~ 40480582 (+) True XLOC_021936
TCONS_00043441 other downstream 811679 40752704 ~ 40752818 (+) True XLOC_021939
TCONS_00043458 other downstream 2250214 42191239 ~ 42191353 (+) True XLOC_021959

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU14337 True 268 TUCP 0.40 3 CI01000001 367242 ~ 397133 (-)