RNA id: TCONS_00043419


Basic Information

Item Value
RNA id TCONS_00043419
length 2006
RNA type mRNA
GC content 0.52
exon number 13
gene id XLOC_021925
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39695827 ~ 39727347 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGAGGAGGACAGAAACATGACCGGTCATCAGCAGAGAAAGTGTTTGGTCAACAGTTGAGTGAACCGGGACGCTTTGCTTATGCTGGGTTATGTGGAGTGTCCCTGGGTCAGCTGTTTCATGGACCTgaacaaaaGAGTTTTCGTGAGTCGTATCTGGAGGCTCTGGTGCAGTGGCTGAATCTGGATGAGTCTGTGATGCCGGTGATGCAGGCGTTTCTGGCAGGGCTCGGGTTCGAAGGCTCAGACACTTTCCTCTCCATCCTACACGCAGAACCGCTGCTCAGAGCCGGAGCTTTACCCATCACTCAGGATCTCGTGTCATTCTCAGTCAAAGATGGACAGTATGATGCCCGGGCCCGTGTGCTGATCCGCCATGTCAGCTGTTTGCTGCGAGTGACCCAACAGCAGCTGGAGGATTTTGAAGAGACTCTTGGAGAGAAATTGAGAGAGGCCGGAGAGGAGAGCGCAGAAGAGTCTTCCAGGAGGCAGAAGAAAGAGCGTGGTCGTAAATTGCGCCGGTACCTGCTCATCGGGCTGGCCACTGTGGGTGGAGGGACAGTCATCGGGGTTACAGGAGGACTGGCGGCTCCTCTGGTGGCTGCTGGAGCAGGAGCAGTGCTGGGTGCAGGTGGAGCCGCTGTTCTGGGATCAGCTACAGGTATCGCTATCATGGCCTCACTGTTTGGAGCCGCAGGCTATAAAATGAACAAGCGTGTTGGTGCTATCGAGGAGTTCGAGTTTCTTCCGATGAGCTCTGGAAAGCATCTTCATCTCACTATAGCCGTGACAGGCTGGCTCTGCAGCGGCAAATACAGTTCGTTTCAGGCTCCCTGGTCCAGTCTAGGAGCCTGTGGTGAGCAGTACTGTCTGAAATGGGAATCGCGGTATTTAAAGGACCTAGGCTCTATTCTGGACTCATTATGGGATGGGCTTGTAAGCGTCGTAGCGCAAGAGGCCCTAAAATACACTGTGCTTTCAGGGATAGTGACCGCTCTGACATGGCCTGCATCTCTGTTAGCTGTGGCCAGTGTGATCGACAACCCTTGGGGAGTTTGCTTGAGCCGCTCAGCTGAGGTGGGCAAACACCTCGCACAGGTCCTCCGCAGCCGACAGCAGGGAAAGCGTCCCGTCAATCTAATCGGCTTTAGTCTGGGAGCTCGAGTCATCTACTTCTGCCTTGAGGAGCTGGCTAATGATCAAGGTAGTGAAGGTGTGGTGGAGGACGTGGTGCTGCTGGGAGCTCCTGTGGACGGGTCTGAGAAAGCCTGGCAGAGACTATCCAGAGTAGTTGCTGGGAAGATTGTTAATGGCTATTGCAGagGGGATTGGCTACTTGGATATCTGTACAGAAGTTCATCTGTTCAGCTGTGTGTTGCCGGACTTCAGCCAATCAGTTCGAAAGACCGCAAAATAGTCAATGTGGATCTGTCATCAGTGGTAAAAGGACACCTGGATTATATGCGTCAGATGGACACCATCCTCGTAGCAGTGGGGGTTCCTACCAGGGAAGAAACTGGAGCAATGAGTGGTAAACTACAGCTGGTTCATGTATCTCAGGAAAAAGCAGACACTCCAGAATCAGCCGGTCAGAGTGAAGGTAAaataacaccatctctaaacatcaGAGATCTCTCAGACACTACTGATGAAAATGCTGATGAAAACCAAAAGCAGAGCGAAGTGCGGTGCGAGAGGCAGGACTCTGAGAATGGCTGGGATATTCCTGATATATCCGATTTACTCGACTCCATTAGTGAATCCGATGGCATCCTTGAACCCTCCGAAGGGAGGAATACACATTCGCCTTGTGATCCCAGAGGTGAAGATCATGTCGAATTATCTCAGGAACAGAAGCAAACAGGCAGAGAAGATGAAAGTGACTCAGAGTTTGAGCAGAAGTCTTGGGACTGGGAGGACACACACTGGACTACTGAATGTGCAAACACAACTGAAGCACGAGATCAATTAGGCAATGGTAAACCTGCCATTTCTGagccaagataa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-216 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMCO4 (transmembrane and coiled-coil domains 4).

Ensembl:

ensembl_id ENSDART00000134589

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043411 lncRNA upstream 207406 39462206 ~ 39490351 (+) False XLOC_021921
TCONS_00043408 lncRNA upstream 271961 39347185 ~ 39425796 (+) False XLOC_021920
TCONS_00043402 lncRNA upstream 513448 39183246 ~ 39184309 (+) True XLOC_021918
TCONS_00044897 lncRNA upstream 1142462 38537568 ~ 38555295 (+) True XLOC_021914
TCONS_00044693 lncRNA upstream 1400968 38266610 ~ 38296789 (+) True XLOC_021912
TCONS_00044694 lncRNA downstream 25141 39752488 ~ 39752964 (+) True XLOC_021926
TCONS_00044898 lncRNA downstream 797047 40524394 ~ 40526983 (+) True XLOC_021937
TCONS_00044899 lncRNA downstream 1087396 40814743 ~ 40815221 (+) True XLOC_021940
TCONS_00044900 lncRNA downstream 1130853 40858200 ~ 40866526 (+) True XLOC_021941
TCONS_00044695 lncRNA downstream 1277685 41005032 ~ 41019226 (+) True XLOC_021944
TCONS_00043416 mRNA upstream 71076 39611688 ~ 39626681 (+) True XLOC_021924
TCONS_00043415 mRNA upstream 90078 39606108 ~ 39607679 (+) True XLOC_021923
TCONS_00043414 mRNA upstream 99856 39558508 ~ 39597901 (+) True XLOC_021922
TCONS_00043413 mRNA upstream 168769 39481537 ~ 39528988 (+) True XLOC_021921
TCONS_00043412 mRNA upstream 169433 39462208 ~ 39528324 (+) False XLOC_021921
TCONS_00043422 mRNA downstream 127219 39854566 ~ 39933527 (+) False XLOC_021927
TCONS_00043421 mRNA downstream 127219 39854566 ~ 39933527 (+) False XLOC_021927
TCONS_00043423 mRNA downstream 127249 39854596 ~ 39941025 (+) True XLOC_021927
TCONS_00043424 mRNA downstream 236252 39963599 ~ 40043212 (+) False XLOC_021928
TCONS_00043425 mRNA downstream 243078 39970425 ~ 39974080 (+) True XLOC_021928
TCONS_00043391 other upstream 1361873 38335760 ~ 38335884 (+) True XLOC_021913
TCONS_00043382 other upstream 1603197 38092005 ~ 38094560 (+) False XLOC_021909
TCONS_00043383 other upstream 1603593 38092010 ~ 38094164 (+) False XLOC_021909
TCONS_00043378 other upstream 1843135 37851830 ~ 37854622 (+) True XLOC_021906
TCONS_00043376 other upstream 1929601 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043431 other downstream 578897 40306244 ~ 40306371 (+) True XLOC_021932
TCONS_00043437 other downstream 739155 40466502 ~ 40472088 (+) True XLOC_021935
TCONS_00043438 other downstream 749873 40477220 ~ 40480582 (+) True XLOC_021936
TCONS_00043441 other downstream 1025357 40752704 ~ 40752818 (+) True XLOC_021939
TCONS_00043458 other downstream 2463892 42191239 ~ 42191353 (+) True XLOC_021959

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_00445369_00466166.mRNA True 2990 mRNA 0.47 15 CI01000001 445240 ~ 466897 (-)