RNA id: TCONS_00044213


Basic Information

Item Value
RNA id TCONS_00044213
length 700
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_022407
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27575539 ~ 27589829 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGTCCTGtagcttgaaaacaacattaaataagcTACAGTTATTGCTTCATTTCGGGTCTcctgACACTGAACCACTTTCGAGATGTCGTCCTCGAACCCTCTGCGAGCCCAGAACAGAAGCCAGCAGGATCAGACAGGGATGTTGAAGAGTCAGGATTTGAGGACTAAACCGAGTGCTTCCTCCACGAAAAGAGGATCTGAGAATCTGGATCCCAGTGCTTCTGCTGAAGCTGGAAAGGTTGTCAGTAAACTAAAAGGTGTCAGCAGACTTCCTGTCCTCGCAAAGTCTCTGCAACCAGCTCTAAGTGAACTTTCTCAAAATCCCAATCATAACAAATGGGAACAGAGGCCTCTTGCGGGTAAAGCTCAGAAAAAAAAGACCTGCACCAAACCTGTTCCTTTCAATTTGTCCCAATCACGGACACGCATTCAGAAGAGCACAGACGTTTCCCAAGGAAAACCACCCTTGATGCCTTCAGCTCGACTCACAACTGCGGAAAAATTGAGGGACTTAAATGCAGGATCTTCGCAGAATCTCTCATCAGCTGTGCACAATGTCTTCTCACGTGAGGGATTGAGTGCTGTTGGAGCTCAATGCATGATGCCACGTTTATCTACCTGCCCTTCTGGACCAGGAGCCTCTAATAATTTGCCTCAAAGAGTTTTGAAGAAGACCCATCATGGCGTTGATGCCACTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000138381

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044209 lncRNA downstream 24209 27555849 ~ 27558715 (-) True XLOC_022406
TCONS_00045021 lncRNA downstream 337689 27233879 ~ 27245235 (-) True XLOC_022399
TCONS_00044738 lncRNA downstream 383829 27191956 ~ 27199095 (-) True XLOC_022400
TCONS_00044194 lncRNA downstream 459801 27113460 ~ 27123123 (-) True XLOC_022398
TCONS_00045020 lncRNA downstream 615519 26961010 ~ 26967405 (-) False XLOC_022396
TCONS_00045022 lncRNA upstream 63142 27652896 ~ 27675394 (-) True XLOC_022412
TCONS_00044220 lncRNA upstream 98877 27688631 ~ 27695173 (-) False XLOC_022413
TCONS_00045024 lncRNA upstream 137541 27727295 ~ 27729454 (-) False XLOC_022415
TCONS_00045023 lncRNA upstream 137541 27727295 ~ 27729454 (-) True XLOC_022415
TCONS_00045025 lncRNA upstream 180727 27770481 ~ 27772372 (-) True XLOC_022416
TCONS_00044208 mRNA downstream 11257 27553786 ~ 27571667 (-) False XLOC_022406
TCONS_00044206 mRNA downstream 34993 27511709 ~ 27547931 (-) False XLOC_022405
TCONS_00044207 mRNA downstream 61029 27516115 ~ 27521895 (-) True XLOC_022405
TCONS_00044205 mRNA downstream 76763 27499282 ~ 27506161 (-) True XLOC_022404
TCONS_00044204 mRNA downstream 77099 27499100 ~ 27505825 (-) False XLOC_022404
TCONS_00044214 mRNA upstream 1612 27591366 ~ 27607039 (-) False XLOC_022409
TCONS_00044215 mRNA upstream 2593 27592347 ~ 27608257 (-) True XLOC_022409
TCONS_00044216 mRNA upstream 32266 27622020 ~ 27633730 (-) True XLOC_022410
TCONS_00044217 mRNA upstream 51717 27641471 ~ 27647769 (-) True XLOC_022411
TCONS_00044218 mRNA upstream 93260 27683014 ~ 27692717 (-) False XLOC_022413
TCONS_00044212 other downstream 2632 27580164 ~ 27580292 (-) True XLOC_022408
TCONS_00044197 other downstream 347270 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044183 other downstream 761156 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044178 other downstream 907154 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044148 other downstream 1789943 25789132 ~ 25792981 (-) False XLOC_022380
TCONS_00044226 other upstream 219314 27809068 ~ 27822778 (-) True XLOC_022418
TCONS_00044236 other upstream 600775 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044238 other upstream 611206 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044248 other upstream 1596098 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044249 other upstream 1596098 29185852 ~ 29257561 (-) False XLOC_022432

Expression Profile

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