RNA id: TCONS_00044381


Basic Information

Item Value
RNA id TCONS_00044381
length 739
lncRNA type retained_intron
GC content 0.46
exon number 5
gene id XLOC_022507
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33633241 ~ 33680265 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAATGTGCTCAGAAAGTAATGTACTATATTCCATATTACCTTTAGTGTGGTCTGAAAAAGTCCTAGTGCGAGTGTGGTGACTGTCCTGTTCCTCAGGGGCTGATCTGCTAAAACTGACCCGAGAGGACGTCATTCAGATCTGTGGACCTGCTGATGGCATTCGGCTATTTAATGCACTTAAAGGACGGGTTGTCCGTCCAAGGCTCACAATCTATGTTTGCCAGGAATCCCAACAGGCTCGTGAACAGCACCAGAAACATGAGAACGGAGACGGGACTAACAACActttttttgTGTATCACGCCATCTATCTGGAGGATTTAACCGCTGTGGAACTGACGGAAAAGTTGGCTCAACTCTTCAGCATCTCTCCACGCCAGATCAGTCAGATCTTCAAGCAGGGACCGACTGGCATCCATGTGTTAGTCAGTGATGAGATGATTCAGAACTTTCAAGATGAGGTGTGTTTTGTCCTGGACACAATGAAAGCTGAAACAAACGATGGCTATCACATCATTTTGAAGTGAATGCATTGGATGCAGGGGAGTGAACAGTCCCTAATGTTTTTCTTAAGATTCAACCCACAGCCCCCTTCCTTGCGCACTTCCTGGACTTTAACCGAAGATCGCTTTGCTCGGAATAGTAATGGAGACGATCATGGGAAAGGAAAAGACCCATTTTTAAATCGTAACTCTCCTGTTGTTCATGGAGCGTTTGCTGCCTTTCCCACACACCCTTC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2523 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TFCP2 (transcription factor CP2).

Ensembl:

ensembl_id ENSDART00000140107

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045061 lncRNA downstream 39161 33608009 ~ 33618846 (-) True XLOC_022506
TCONS_00045060 lncRNA downstream 40939 33608009 ~ 33617068 (-) False XLOC_022506
TCONS_00044375 lncRNA downstream 189678 33463217 ~ 33468329 (-) True XLOC_022505
TCONS_00045059 lncRNA downstream 215665 33411491 ~ 33442342 (-) True XLOC_022504
TCONS_00045058 lncRNA downstream 215813 33411491 ~ 33442194 (-) False XLOC_022504
TCONS_00044387 lncRNA upstream 64285 33731189 ~ 33738492 (-) False XLOC_022509
TCONS_00044389 lncRNA upstream 64285 33731189 ~ 33738564 (-) False XLOC_022509
TCONS_00045062 lncRNA upstream 64285 33731189 ~ 33738945 (-) False XLOC_022509
TCONS_00044385 lncRNA upstream 64285 33731189 ~ 33739111 (-) False XLOC_022509
TCONS_00044386 lncRNA upstream 64555 33731459 ~ 33735925 (-) False XLOC_022509
TCONS_00044376 mRNA downstream 3118 33633241 ~ 33654889 (-) False XLOC_022507
TCONS_00044378 mRNA downstream 17048 33633488 ~ 33640959 (-) False XLOC_022507
TCONS_00044377 mRNA downstream 17048 33633488 ~ 33640959 (-) False XLOC_022507
TCONS_00044374 mRNA downstream 99846 33447625 ~ 33558161 (-) False XLOC_022505
TCONS_00044373 mRNA downstream 296582 33357163 ~ 33361425 (-) True XLOC_022502
TCONS_00044382 mRNA upstream 14773 33681677 ~ 33710029 (-) False XLOC_022508
TCONS_00044383 mRNA upstream 16581 33683485 ~ 33702900 (-) False XLOC_022508
TCONS_00044384 mRNA upstream 32413 33699317 ~ 33709964 (-) True XLOC_022508
TCONS_00044388 mRNA upstream 64664 33731568 ~ 33738570 (-) True XLOC_022509
TCONS_00044390 mRNA upstream 72311 33739215 ~ 33753361 (-) False XLOC_022510
TCONS_00044369 other downstream 356588 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044368 other downstream 438879 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044367 other downstream 782347 32875546 ~ 32875660 (-) True XLOC_022497
TCONS_00044359 other downstream 1323893 32325967 ~ 32334114 (-) True XLOC_022488
TCONS_00044348 other downstream 1518049 32139843 ~ 32139958 (-) True XLOC_022484
TCONS_00044391 other upstream 72573 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044400 other upstream 301962 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044402 other upstream 311521 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044409 other upstream 1577474 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044432 other upstream 2197822 35864726 ~ 35864853 (-) True XLOC_022530

Expression Profile

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