RNA id: TCONS_00046076


Basic Information

Item Value
RNA id TCONS_00046076
length 1015
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_023295
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 8244085 ~ 8261786 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGGGACTAGAGAATCTCCACCAATCAGCGCCCGCTTAATGTAGTCCGTTGGTTTCCGGTGTGATCAAGATGGCGCTGCGGGAGCTGAACTCGCTTGAGAGATTTCTAGGattaaaaaaggcaaataaataCAGCACGCAAGGAGGGAAAAAGgtCCCTGTTCTCCAAAACAACAATGGGCCAGCATTGACTGGTCTGGTTACTATAGCGTGTCATCTGGTTAAAGAAGCCAAGAGGCCAGAGCTGCTAGGAGACGATGCTGAACAGAGAGCTGTGGTCCAGCAATGGCTTGAACATCGAATAACAAAACTAGACAACTGTTCTAAAGAAGAGGTCAAAGTTATATTGAAGGATCTTAACCGATACCTGGAGGACAAAGTTTACCTGGCTGGGAACGTCTTCACCCTGGCAGACATACTCATGTATTACGGAATCCACCACATTATTGTGGAATTGGCTATACAAGAGAAAGAGTGCTATCTGAATGTCAGCAGATGGTTTGATCATATTCAACACTATCCAGGCATACGGCATCATTTGCCTCCTGTGGTGGTTCTGAGGAACAGAGTTTACCCAAGTGGTCACCACTGAAGGTTTTGGTTACTTACACGTCCAATAAGCCAGACCTTAAGATCTTCTAAGGTAACAAGCTGACATGATGTTAACCCAAAACTTCAGTATAATTAAAGCAGGTTGTTTGTTTTCGTGAGCTGAATAATGGCTGCTAATAGTGTTATTTTATATGTTAGCTTAGCATGTTTAAGGATTGGAGTATCTTGATCAATGATCAACATGAAACTGCCTTTTGTTAATGGAAAAGCAGCTCATTCTAATGTTaacttattaatagttttttggaTAAGGTAGTCaatgcttaaaataataaaaagaaattcaCAAAATTGTCCCTTATGCTTTTGAACCCTTGGAAATTTGACATCATTGGCAGTTTTGGGAcagaggtcaccaatctcggtcctggggggccggtgtccctgcagggtttagctccaa

Function

GO:

id name namespace
GO:0043517 positive regulation of DNA damage response, signal transduction by p53 class mediator biological_process
GO:0017101 aminoacyl-tRNA synthetase multienzyme complex cellular_component

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-4949 Predicted to act upstream of or within positive regulation of DNA damage response, signal transduction by p53 class mediator. Predicted to be part of aminoacyl-tRNA synthetase multienzyme complex. Orthologous to human EEF1E1 (eukaryotic translation elongation factor 1 epsilon 1).

Ensembl:

ensembl_id ENSDART00000106388

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046062 lncRNA downstream 666325 7573810 ~ 7577760 (-) True XLOC_023285
TCONS_00047151 lncRNA downstream 1596821 6607112 ~ 6647264 (-) False XLOC_023279
TCONS_00046050 lncRNA downstream 1596886 6644430 ~ 6647199 (-) True XLOC_023279
TCONS_00046039 lncRNA downstream 1901188 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00047150 lncRNA downstream 2142965 6088272 ~ 6101120 (-) True XLOC_023272
TCONS_00047152 lncRNA upstream 990948 9252734 ~ 9286642 (-) False XLOC_023304
TCONS_00046093 lncRNA upstream 1008163 9269949 ~ 9286635 (-) False XLOC_023304
TCONS_00047153 lncRNA upstream 1008165 9269951 ~ 9286635 (-) False XLOC_023304
TCONS_00047154 lncRNA upstream 1008165 9269951 ~ 9286636 (-) True XLOC_023304
TCONS_00047155 lncRNA upstream 1013309 9275095 ~ 9281017 (-) True XLOC_023305
TCONS_00046075 mRNA downstream 29832 8133726 ~ 8214253 (-) True XLOC_023294
TCONS_00046074 mRNA downstream 248125 7988458 ~ 7995960 (-) True XLOC_023293
TCONS_00046072 mRNA downstream 286504 7941373 ~ 7957581 (-) True XLOC_023291
TCONS_00046071 mRNA downstream 417596 7820042 ~ 7826489 (-) True XLOC_023290
TCONS_00046070 mRNA downstream 475270 7748952 ~ 7768815 (-) False XLOC_023289
TCONS_00046077 mRNA upstream 131504 8393290 ~ 8412526 (-) False XLOC_023296
TCONS_00046078 mRNA upstream 131512 8393298 ~ 8409708 (-) False XLOC_023296
TCONS_00046079 mRNA upstream 144861 8406647 ~ 8409641 (-) True XLOC_023296
TCONS_00046080 mRNA upstream 459890 8721676 ~ 8729716 (-) False XLOC_023297
TCONS_00046081 mRNA upstream 459890 8721676 ~ 8731039 (-) False XLOC_023297
TCONS_00046073 other downstream 276485 7967484 ~ 7967600 (-) True XLOC_023292
TCONS_00046064 other downstream 619319 7619376 ~ 7624766 (-) True XLOC_023286
TCONS_00046061 other downstream 675759 7563361 ~ 7568326 (-) False XLOC_023285
TCONS_00046060 other downstream 679239 7563361 ~ 7564846 (-) False XLOC_023285
TCONS_00046055 other downstream 1471708 6771308 ~ 6772377 (-) True XLOC_023283
TCONS_00046092 other upstream 842827 9104613 ~ 9126025 (-) True XLOC_023303
TCONS_00046097 other upstream 1305013 9566799 ~ 9612356 (-) True XLOC_023307
TCONS_00046100 other upstream 1450709 9712495 ~ 9712610 (-) True XLOC_023309
TCONS_00046104 other upstream 1636276 9898062 ~ 9949362 (-) True XLOC_023311
TCONS_00046122 other upstream 1994128 10255914 ~ 10256030 (-) True XLOC_023317

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000327_01786344_01796210.mRNA True 1461 mRNA 0.41 4 CI01000327 1785405 ~ 1796210 (-)