RNA id: TCONS_00046107


Basic Information

Item Value
RNA id TCONS_00046107
length 2962
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_023312
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 9976212 ~ 9991286 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACCGATTGGTCTGAGGCAATTTTCTAGCCAACTGACTGGTAGTTGCACACTATAAAAAGGCCAGATCAAAAGTAGCACTGTATTGTTTGGTGAAGCTTTTCTTTAAGTTAGTAGCTTCTGTGCTGAGGGAATTGGATGGTTGTTTTGACTTGGTTTACTATGTGTGTTTCAAGAATGTGGATTTTAAGTTACTCTTTAGCAGTACTTTTAGCCCTTGGTGCATGTGACTACAATGATATTGCAACTGTTTATTCGTACAGCCCTGGCAGCAGTGGAGGCCATCTTGGATCTAATAATCCTAGCCAGTCCATGCAGGAGGTGAAACAAAGTGTCCTTGACTTTTATGGTGGAAATGTTGTAGCTGGACCAGTCAGCAAAGATAAATGGGGCTTTGAGATGGGAAGCTACAGCTCTCAGGCTGGCTCTTCAGGCGCTCTCATGACAAGTGGAAAACCAGGGTCGGGTTCTAACAAACAAGGATTTTATGTTGATTCGGTTGGAACTGGTAGTCTTGTTTATGGTTCTGTGGGAAATGCAGTGAATATGGGCATGTCTGGATATGATTCAAGTCCGTCAACTACTGTCCAAGGCTCTGAAGTAACCAGTTCTTCTGTCCTGAGCCCATTGCAGCAAAGCAGTTATTCTGTTTCTAAGCCAGTGCAGGTAGTTTCCTCAATTCCACTTCAAATTAGCAGTACGTCTGTGGTGAAACCCAGCAGCCAGCAGTTAGTGCAGGCTATTTCCCAGTCCAGCAGTGAGCAACCAACAAGTTCTGGAACCATAGCCCAGTCTAATCCTTTGCAGTTATCCCTGCCCAGTGGCCAACAGATTTTTCAGACTAGCTTCCAGTCTGCAGTGCCATCTGGTAGATGGCCTCTTAAACCTCTGAAAGGTAAACCCCACCATCAAACTGGTTCAAGGCCAGTTCACAATGCACCAATTAGCTCCTCGAAACCTTCCAAAGCCTCACAACCCAGCTTATCACTATTACAGTATGGTAGTGAGCCAAGTAGCCTAGCTATGGCTAGCTATGAACTTCTAAGCCAGTCAGGCAGCCAGCAATCAGCCCAGCCCAGTGGCCAAACTGTGAATCAACCAAGCATCATACACACTCCCAGTGTCATTGACATCTCTGTGGTCCAGCCCAGTGGCCAGCTAATTCAACAGGTAGTTGATGCCTCTGTGGCCCAGGTCTCCAGCCAGCAGCTATTACCGGGAGGCCAATTGGTTTCCCAGTCAAATAATGTACAGCCAGTAGATGGAAGTTATGTTTTTGTGGCTCAGCCAGGTGGACCGACTCCTCTCAAGCACCACAAAGATCAGTCCAGTAGCCAAATACCAGTGCAAACCCACTACCAGTCTGGGCCCCAGTTTGTTCAACAACCAGCACAAATCTACCAGTCTGCTAGCCAGCCCACGGTGCCACAACTAGCAGAAGCAATCTACAAGGCAGAGGCCCAGTCTGCTTCCCAACAACCAGCACAAGCTAGCTACCAGTTGGTGGCACAGTTGGGTGTCCAACAGCCAGCACAGGTCAGCTCATCTGTAGCTCGACCAAGCCATCTGCAAGCAGGACAGTCCAACTATGAGTATGTTGTCAACCAGAATGGGCAAACCCTTTTCAAGCCAGTGCAGTCCCATGGGATTCATCAGATTGGCTCCAAACTTTTTTCATGCCATGAGCTACCACAGCACGGTTACAAGCGGAGACCTCACTCTCCATCTTCACACCGTCTTCCAAACCCAGCTCAGGTTATCAAGCCTGTTTTGCCCAGTGACCCGATTCCTGTGGATCTCAACTTCCCTAGCCCCCTCACATCTACCTTCAGACCAGCACATCTTTCTGGACATCCTAGCTTGCAGTCTGTTGTGCTTCAAAGTGAACAGCCAGGTGTGCTAGAGATCCAACCCAGTGATTTGTCTCATCCCAAGCCTGGACCAGTGAGTTATACTTTAGTATCTCAGCCCACTGGTCATCCTTCAAGACCATTGCAGCAGCCTAGCTACCAGCCTCCAGCCAAGCTATGGCAAGATCTGTTTTGGCCCATAGTGAAGCCAAACAAACTGGAGTATTCCATCTTTGAGGCACAAGTTCTTCCTAACCAGGTGTCTTCTGTTCCTGTACAGTTTGTTTCCCAGCCTCAAATGCTCCCTGCTAGTCTGTCTATCACGCAGTCCAGCTCTTCCTCAGCTGTGCCAGTGCAGACCAGCAATCAGCCGCAGGTAGTTTCAAGTTATGAGACAGTCTTCCTGCCTGTGTCCCAGACCTCTTCAGTGGTGGTGCCATCAAGTTCCCAAACCTCGAGCACCCCAGTAGTTTCAAACTTTAAGTCGTTGTTACAATCAGTGCAACCTGAACTTCCAATTCCAGTCCAGTTGAATTATCAGACTGTCACAGATCAAAATGCTCCTGGACCTGCTGGAAGCAATAGGCATTCATCGTGGAAGTTGCTTAAGCTGTTGCAACAAGTCAAGTCCTAGTTTGTGTTTGCTGTTTcctgattttgtttattttctgatgTCAATAAATTTTATTGTCTATGGATTTGTgttaattgcttttatttattctctCCTTTCCCTTTGTTTCATAGTTGAGCAAagcgaattattattattattattattattattattttttatttttttttttaaaaagtatcctccatttgatttatcattttgaAACCTTAAGTGAGCTAACTAGTGAGCAACTAGAACTTTAATTGACCAAGTTACTTTGGTGCTTAGATTATTAGGTGGCATGGTTGAACTGTTGTTAGGGCACTGTCACCTTCCAGCAAGGTTGCCGGTATGAGTTCTTGCTAGGCccaaatcaatattattattattatttttttttttttttttttttttttttttaaacatccagTCTGTGCTGTAAAAACTGATTTGCATAAAAGAAAATATAACTAAAAATGCCACATGGTGGCTCTGGTT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070822-24 No description available

Ensembl:

ensembl_id ENSDART00000193536

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047157 lncRNA downstream 101521 9870547 ~ 9874691 (-) True XLOC_023310
TCONS_00047156 lncRNA downstream 363895 9507674 ~ 9612317 (-) False XLOC_023307
TCONS_00047154 lncRNA downstream 689576 9269951 ~ 9286636 (-) True XLOC_023304
TCONS_00047153 lncRNA downstream 689577 9269951 ~ 9286635 (-) False XLOC_023304
TCONS_00046846 lncRNA upstream 10113 9995132 ~ 9996478 (-) True XLOC_023313
TCONS_00047159 lncRNA upstream 284837 10269856 ~ 10275658 (-) True XLOC_023318
TCONS_00046847 lncRNA upstream 512350 10497369 ~ 10499902 (-) True XLOC_023320
TCONS_00046143 lncRNA upstream 1063841 11048860 ~ 11051340 (-) True XLOC_023322
TCONS_00046848 lncRNA upstream 1889318 11874337 ~ 11875212 (-) False XLOC_023335
TCONS_00046103 mRNA downstream 15896 9896229 ~ 9960316 (-) False XLOC_023311
TCONS_00046102 mRNA downstream 15896 9896229 ~ 9960316 (-) False XLOC_023311
TCONS_00046101 mRNA downstream 15922 9895851 ~ 9960290 (-) False XLOC_023311
TCONS_00046099 mRNA downstream 286282 9673232 ~ 9689930 (-) True XLOC_023308
TCONS_00046098 mRNA downstream 286297 9673227 ~ 9689915 (-) False XLOC_023308
TCONS_00046114 mRNA upstream 2333 9987352 ~ 9991286 (-) False XLOC_023312
TCONS_00046113 mRNA upstream 2333 9987352 ~ 9991286 (-) False XLOC_023312
TCONS_00046115 mRNA upstream 2808 9987827 ~ 9991153 (-) False XLOC_023312
TCONS_00046116 mRNA upstream 2809 9987828 ~ 9989634 (-) True XLOC_023312
TCONS_00046117 mRNA upstream 10058 9995077 ~ 9997948 (-) False XLOC_023313
TCONS_00046104 other downstream 26850 9898062 ~ 9949362 (-) True XLOC_023311
TCONS_00046100 other downstream 263602 9712495 ~ 9712610 (-) True XLOC_023309
TCONS_00046097 other downstream 363856 9566799 ~ 9612356 (-) True XLOC_023307
TCONS_00046092 other downstream 850187 9104613 ~ 9126025 (-) True XLOC_023303
TCONS_00046073 other downstream 2008612 7967484 ~ 7967600 (-) True XLOC_023292
TCONS_00046122 other upstream 270895 10255914 ~ 10256030 (-) True XLOC_023317
TCONS_00046123 other upstream 364128 10349147 ~ 10377001 (-) False XLOC_023319
TCONS_00046137 other upstream 920153 10905172 ~ 10905286 (-) True XLOC_023323
TCONS_00046140 other upstream 963045 10948064 ~ 10948145 (-) True XLOC_023324
TCONS_00046141 other upstream 1026417 11011436 ~ 11011551 (-) True XLOC_023325

Expression Profile

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