RNA id: TCONS_00046113


Basic Information

Item Value
RNA id TCONS_00046113
length 3228
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_023312
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 9976212 ~ 9991286 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGTGCAACAACTGACACCTGAAACTAATAATGATCCATTAGACATTTCTGTGACAACCGATTGGTCTGAGGCAATTTTCTAGCCAACTAGTTGCACACTATAAAAAGGCCAGATCAAAAGTAGCACTGTATTGTTTGGTGAAGCTTTTCTTTTAGTTTGTAGCTTCTGTGCTGAGGGAATTGGATGGTTGTTTTGACTGGGTTTACTATGTGTGCTTCAACAATGTGGATTTTAAGGTATGTTGCTTTTCTTGTGGTTTTTAATTGTGTGTTTTACCATTTACCTTGTAATTAAAATGAATGTTCATCTCTTGCAGTTACTCTTTAGCAGTACTTTTAGCCCTTGGTGCTTGTGACTACGATGATATTGCAACTgTTTATGCATACAGCCCTGGCAGCAGTGGAGGCCATCTTGGATCTAATAATCCTAGCCAGTCCATGCAGGAGGTGAAACAAAGTGTCCTTGACTTTTATGGTGGAAATGTTGTAGCTGGGCCAGTCAGCAAAGATAAATGGGGCTTTGAGATGGGAAGCTACAGCTCTCAGGCTGGATCTTCAGGCGCTCCGATGACAAGTGGAAAACCAGGGTCCGGTTCTCATATTGCAAGCAAACAAGGATTTCATGTTGATTCAGTTGGAACTGGTAGTCTTGTTTATGGTTCTGTGGGAAATGCGGTGAATATGGGCATGTCTGGATATGATTCAAGTCAGTCAACTTCTGTCCAAGGCTCTGAAGTCACCAGTTCTTCTGTCCTGAGCCCATTGCAGCAAAGCAGTTATTCGGTTTCTAACCCAGTGCAGGTAGTTTCCTCAATTCCACTTCAAATTAGCAGTACGTCTGTGGTGAAGCCCAGCAGCCAACAGCTGGTGCAAACTATTTCCCAGTCCAGCAATGAGCAACCAGCAACTTCTGGAACCATAGCCCAGTCTAGCCCTCTGCTGTTGTCCCTGCCCAGTGGCCAACAGATATTTCAGACTAGCTTCCAGTCTGCAGTGCCATCTGGTAGATGGCCCCTTAAACCTCTGAAAGGTAAACACCACCATAAAACTGGTTCAAGGCCAGTTCACAATGCACCAATCAGCTCAAAACCTTCTAAAGCCTCACAACCCAGCTTATCAATATTACAATATGGTGGTGTGCCAGATAGCCTTGCTATGGCTAGCTATGAACTTGTGAGCCAGTCAGACAGCCAGCAATCAGCCCAGCCCAGTGGCCAAAATGTGAATCAACCAGGCATCATACAAACTCCCAGTGTCATTGACATCTCTGTGGTCCAGCCCAGTAGCCAGCTGATTCAACAGGCAGTTGATACCTCTGTGGCCCAGGTCTCCAGCCAGCAGCTTTTACAAGGAGGTCAATTGGTTTCCCAGTCAAATAATGTTCAGCCAGTAGATGGAAGTTATGTTTTTGTGGCTCAGCCAGGTGGACCGACTCCTCTCAAGCATCACAAAGGTAAACCCCACTTTGGGTCTAAACTTTCCAGTACTAGTCCTCTCCAGACACTAACATTTACTTCTGTAGATCAGTCCAGTAGCCTAAAACCAGTACAAACCATCAATCAGTCTGGACCTCAATTTGTTCAACAACCAGCACAAATAATCTACCAGTCTGCTAGCCAGCCCACTGTGCCACAATTAGTAGAAGCCATCTATGAATCAGAGACCCAGCCTGCTTCCCAACAACCAGCACCAGCTAGCTACCAGTTGGTGACTCAGTTGGGTGTCCAACAGCCAGCACAGGTCAGCTCATCTGTATCCCAACCAAGCCATCTGCAAGCAGGACAGTCCAACTATGAGTATGTTGTCAACCAAAATGGGCAAACCCTTTTCAAGCCAGTGCAGTCCCATGGGATTCATCAGATTGGCTCCAAACTTTATTCATGCCATGAACTACCACAGCATGGTTACAAGCGGAGGCATCACTCTCCATCTTCACACAGTCTTCCAAACGCAGCTCAGGTTATCAAGCCCGTTTTGCCTAGTGACCCGATTCCTGCTGATTTAAACGTCCCTAGCCCCCTCACATCTACTTTCAGACCAGCACATCTTTCTGGACATCCTAGCTTGCAGTCTGTTGTGCTTCAAAGTGAGCGGCCAGTTGTGCTAGAGATCCAACCCAGTGGTTTGTCTCATGCCAAGCCTGGACCAGTGAGTTATACTTTAGTATCTCAGCCCACTGGTCATCCTTCAAGGCCATTGCAGCAGCCTAGCTACCAGCCTCCAGCCAAGCTATGGCAAAATTTGTTTTTGCCCATAGTAAAGCCAAACAAACTGGAGCTTTCCAGCTTTGAGGCACAAGTTCTCCCTAGCCATGTGTCTTCTGTTCCTGTACAGTTTGTTTCCCAGCCTCAAATGCTCCCAGCTAGTCTGTCTGTCACTCATTCCAGCTTATCCCCTGCTTTGCCAGTGCAGTCCAGCTATCAGCCTCAGGTAGTGTCAAGTTCTGAGACTGTATTCCAGCCTGTATTGCAGACCTCTTCAGCGGTGGTGCCATCAAGTTCCCAAACCTGGAGTACCCCAGTAGTTTCAAACTTTAAGTCGTTGTTACAATCAGTGAAACCTGAACTTCCAATTCCAGTCCTGTTGAATTATCAGACTGTCACAGATCAAAATGCTCCTGGACCTGCTGGAAGCAATAGGCATTCATCATGGAAGTTGCTTAAGCTGTTGCAACAAGTCAAGTCCTaggtgtttgtttgctgtttcCTGATTTATGCTTGCTTTCTGATGTCAATAAATTATTgttaatgtatttgtgtgtggacctagtttttttttttttttttttttgttttattcttatttataaaaaaacaagctTTGAGTATAAGAAATAGATTTTACAGTAAAGACTTTATTCCCCTTGTCTGTCCATCCTCAGGGGAAAAAAATCTGGATTATTGACACTGAAGTACATGAGTAATGAAACCACAAATTGTAAAATGAACTGCTATTGCACAAGATAATTGAATCAATGtgttaaatgataattaaatctgCATTAAAAATCTACATTCATTATGATTATATTGTCTGATTCTCCATCATAAAGCAGATGAATATCTAGTATTTAATCATGTGGTTTAGTTTTCTCATTTAACTCTGAACAGAACCtaattttaacaaaagtgtccaaagacatatggtaaaGGATTAATTAAAGTTTGTGTGTAGATTTGGTGTTTCTTAGTGTAGagctggattgtggctggaagggtatctgctat

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060818-27 No description available

Ensembl:

ensembl_id ENSDART00000179773

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047158 lncRNA downstream 3553 9982279 ~ 9983799 (-) False XLOC_023312
TCONS_00046845 lncRNA downstream 9349 9976629 ~ 9978003 (-) False XLOC_023312
TCONS_00047157 lncRNA downstream 112661 9870547 ~ 9874691 (-) True XLOC_023310
TCONS_00047156 lncRNA downstream 375035 9507674 ~ 9612317 (-) False XLOC_023307
TCONS_00047155 lncRNA downstream 706335 9275095 ~ 9281017 (-) True XLOC_023305
TCONS_00046846 lncRNA upstream 3846 9995132 ~ 9996478 (-) True XLOC_023313
TCONS_00047159 lncRNA upstream 278570 10269856 ~ 10275658 (-) True XLOC_023318
TCONS_00046847 lncRNA upstream 506083 10497369 ~ 10499902 (-) True XLOC_023320
TCONS_00046143 lncRNA upstream 1057574 11048860 ~ 11051340 (-) True XLOC_023322
TCONS_00046848 lncRNA upstream 1883051 11874337 ~ 11875212 (-) False XLOC_023335
TCONS_00046107 mRNA downstream 2333 9976212 ~ 9985019 (-) False XLOC_023312
TCONS_00046106 mRNA downstream 2333 9976212 ~ 9985019 (-) False XLOC_023312
TCONS_00046105 mRNA downstream 7943 9976212 ~ 9979409 (-) False XLOC_023312
TCONS_00046108 mRNA downstream 8010 9976628 ~ 9979342 (-) False XLOC_023312
TCONS_00046103 mRNA downstream 27036 9896229 ~ 9960316 (-) False XLOC_023311
TCONS_00046117 mRNA upstream 3791 9995077 ~ 9997948 (-) False XLOC_023313
TCONS_00046118 mRNA upstream 12140 10003426 ~ 10006158 (-) True XLOC_023314
TCONS_00046119 mRNA upstream 19344 10010630 ~ 10014624 (-) False XLOC_023315
TCONS_00046120 mRNA upstream 20375 10011661 ~ 10014512 (-) True XLOC_023315
TCONS_00046121 mRNA upstream 27367 10018653 ~ 10021341 (-) True XLOC_023316
TCONS_00046104 other downstream 37990 9898062 ~ 9949362 (-) True XLOC_023311
TCONS_00046100 other downstream 274742 9712495 ~ 9712610 (-) True XLOC_023309
TCONS_00046097 other downstream 374996 9566799 ~ 9612356 (-) True XLOC_023307
TCONS_00046092 other downstream 861327 9104613 ~ 9126025 (-) True XLOC_023303
TCONS_00046073 other downstream 2019752 7967484 ~ 7967600 (-) True XLOC_023292
TCONS_00046122 other upstream 264628 10255914 ~ 10256030 (-) True XLOC_023317
TCONS_00046123 other upstream 357861 10349147 ~ 10377001 (-) False XLOC_023319
TCONS_00046137 other upstream 913886 10905172 ~ 10905286 (-) True XLOC_023323
TCONS_00046140 other upstream 956778 10948064 ~ 10948145 (-) True XLOC_023324
TCONS_00046141 other upstream 1020150 11011436 ~ 11011551 (-) True XLOC_023325

Expression Profile

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