RNA id: TCONS_00003003


Basic Information

Item Value
RNA id TCONS_00003003
length 2708
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id XLOC_000018
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 355481 ~ 358562 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgtgttggcgtgggtttcctccgggtgctccggtttcctccacagtccaaacacatgcgctataggggaactgatcaactacactggccatagtgtatgagtgtgtgtatgggtgtttctcagtactggtttgcagctgaaagggcatccgctgtgtaaaacatatgctgaataagttggcggttcattctgctgtggcgacccctgataaataagggactaagccaaaagaaaattaaccCCCCCCACCAACCATCAGCATTAAAAATAAAGACTCAGACACAGTTTTGTTTTGCTATTGCCTTCATTTGGACAAAATAAACATGTGCACTGAGTGTGTTTCATTCACTGAATTGGTCTGAACACacatcactcactcacacacacacacacacacacactgctgtcccTTCTTAAGGTTCTGTGATCAAAGTTCCTTCAGTTACTGAATGGATCAAAAACAGGAGAAATACTCCTACATGGCATTATTGCATACTTCATACAGTGCACTGGGATTATTGTGAGGTTGTTTTTCGTCACATTCGCATTATTCTgtgatacaaaaataaataacaattcatTTGGGCAGGAAAACGGGGCTGTTCTTAAAATATAGGAGTATTGAAACGTGCATCACTGAACGACAGAAACACCAAACTAACATGAGGACAGACGACAACAGAAGAGTGAAGCTCCGGCTCATAGTTCACCCCAAATCAAGAGATGAAGGAAAGATGGCTTCAGTGTCTTTACCATTACTGTAAAATCATGGCCAATAATTAAAGTGGAGGgggacgcggtggcgcagtaggtagtgctgtcgcctcacagcaagaacaatAACCACAAtttctgacaataaccaaacagcTTAGAAtgcttatcagccaatcagaatccagcattcagcagcactgcaatataatatatatatacatatttttttcattatgtatgtatatatatatattcagtatgtatttgtgaatataaatatgaatattctgTTGATCTGAGGGTGAAATATGAGCAGGGAATATTCTAAACAGGTCTGATGAAGTTCATCCAAAGAAACACATCCATATTAAACACATCTATAAAGTATGATGGGATGGACTGTGagctattattgattattaatcgatgaaacacactcacacatgcactcacgcacacacacactcacagattcacgcacacattcacacacatgcaagcgcacaaaaacacacgcacatatacacatgcatgcacacgcacacacatgtacacactcacacacacatgcaagcgcacataaacacacacacacatttacacattcatgcacacacactcacacatgcaagcacacaaaaacccagacacacacatttacacatgcatgcacacactcatgTGCGCAGacacattcataaatgcacacacagacactcgcacatgcacgcacacacacacacacacacagtaagaaCAGTGTATCAATGCAGTATAAAGACAGACGCTGATGTGCTGCTGAACACAACTGGACCCACAAACCATAAGGAAGTGGTTTAGTGTCACTCCAcacgctgacacacacacacacacatttcccaCAATGCACCTCTTCTTCAGTCTCCCTGGAGACACACTACAGGATCAACACCGGACACGTCTGAACATTCCTGATATAAAGAAACAAATTCAGCCGCAGGTCCGTCATCCAGTCACTTATAAACCCTGTGATAGCAAAGGATTGTGGGATACGTCCTGGAGAACTCCGTTTATAAAACATCTAGAGGACGATTCCttcataaaatgttaaaatgcgcCGCGTGGCGAAGCCTCATCGTCCCAGAGCGCGCCATGTGTAAAGTGCGAGACCGCCGCCGCTCGGCTACTGCATTAAACACCACAGCTTTAGCTCGAGTCAGCGGACACTTCCTGTCAATCACACCTCATTTCCTGTGCAGAGCGAGGGGGTGTGGTCAGATGGAGTAGGTGGAGCTTTCTGACTGCTGGCGGATGTAGCACTGGAAGCTCTGATCACCGATTGGATGTTCCCTGGAAACACAAATATATGATGTGTCATAATCAGATGAAGAATTCCCTGCTTCTCACATGTGCAGTCAGTGATGCAGATAACACCGAGTCATGTGGAGGTGCGTTAGTGCCAATAAAAGAGGCAAtgtgtcttaaagggacagttcacccaaaaaccaTATCTGTGGTGGTTGAAATTACGGAAGTTTTCcaggataaataacaaaatgggacgGTGGCTGGAGATGGggctgaaatacgggagactcctgggaaaaacaggagtgttggcaggtatgctcacacacacacacacacacactctggactctgactacttcaatagaCTGAAATGCCCAGCACGGCATATCAACAATGTCTCGCGCTGAATGCTGTCGACCAAtcgctgtcatcggtccaatcagcgcagattagattgctgggataatcaggtaaaaataaatgcagattataagacaatgaaagtgttttatgAGCTTGCAAGCAGATCAGCCTGTTGCTGGacaccccaaaaccaaaatatgaccctttataAAACATAATGGGGGTTCTTTAACTTCCCTATAATTTTATTTGtcctactatggaattcaatggttagcagtttccaacattcttataaacatcttcttttgtgtttaactgtaAAAGAATTGTCGAAA

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002804 lncRNA upstream 113774 237391 ~ 241707 (+) True XLOC_000015
TCONS_00002803 lncRNA upstream 118058 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002802 lncRNA upstream 119948 227253 ~ 235533 (+) False XLOC_000015
TCONS_00002801 lncRNA upstream 132677 221385 ~ 222804 (+) True XLOC_000014
TCONS_00003002 lncRNA upstream 198199 156792 ~ 157282 (+) True XLOC_000011
TCONS_00000055 lncRNA downstream 222126 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003005 lncRNA downstream 436414 794976 ~ 898180 (+) False XLOC_000026
TCONS_00003006 lncRNA downstream 436414 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003007 lncRNA downstream 657250 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA downstream 657262 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00000035 mRNA upstream 59424 260039 ~ 296057 (+) False XLOC_000017
TCONS_00000039 mRNA upstream 59424 292545 ~ 296057 (+) True XLOC_000017
TCONS_00000034 mRNA upstream 59426 260039 ~ 296055 (+) False XLOC_000017
TCONS_00000038 mRNA upstream 75222 277731 ~ 280259 (+) False XLOC_000017
TCONS_00000037 mRNA upstream 85598 267035 ~ 269883 (+) False XLOC_000017
TCONS_00000040 mRNA downstream 60307 418869 ~ 443759 (+) True XLOC_000019
TCONS_00000041 mRNA downstream 135735 494297 ~ 505620 (+) False XLOC_000020
TCONS_00000042 mRNA downstream 135779 494341 ~ 497021 (+) False XLOC_000020
TCONS_00000043 mRNA downstream 136311 494873 ~ 496858 (+) False XLOC_000020
TCONS_00000044 mRNA downstream 137706 496268 ~ 505617 (+) True XLOC_000020
TCONS_00000036 other upstream 61587 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 342224 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000047 other downstream 155451 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 179027 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 217882 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 860129 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 1216921 1575483 ~ 1575563 (+) True XLOC_000032

Expression Profile

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