RNA id: TU1887718


Basic Information

Item Value
RNA id TU1887718
length 1806
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1649281
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 65521834 ~ 65523785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCCTCTGACCCCGGGGGACTCCACTGCAGGCCTGGGAACCCTCTGACCCCGGGGGACTCCACTGCAGGCCTGGGAACCCTCTGACCCCGGGGGACTCCACTGCAGGCCTGGGAACCCTCTGACCCCGGGGGACTCCACTGCAGGCCTGGGAACCCTCCAGGCCAGGTCCTTCATCCCCGTCAGTGGCCCGCTTGGGCCAGTGAAAATAATATTGTAGTAATGCTATTTTTAATCTAggccagtgccttcagaaagtattcataccccttgacctattccacattttgttgttacagcctgatgtTCAAATGAATTAATGTTTTCTCACcgatctacacacacaataccccttaatgacaaggGGATTTTAGCAGATGTATTGAATGAAATgcagaagtattcacacccttgaggcAATGGTTTGTTGAGGCATCTTTCTTTAAGTGCTGTCAAATTGggtattgatcattgctagaaatccattttcaggtcttgccatagattttgctgagCTCCATTTCCTTTtaataaaaaaaactccctagtccttaacgatgacaagtattctgcccttgagttgcgttcccatgcaaaactagacagatagctaacaactaagtcttcaattAAACTCCCAAGGTGTGACTTTTCTTGAATGAATATATTGAAAACGTTAATGTTGTgaaaaaacaaatattttccaaggCTGAAGCGAGACAAGAAATAACTACATTGAAAGACCTGCACCGTACCGTTGTTTGTAGCTGCTTCTATGCGTGCAGAACAaattctctacttcctgtttgTAGTCTTTCTAAGTACCAGAAAGCTCCACTAGGGGGCAAATAACACCATTGAACACAATGAAAATCCAATTTAACCATTGTAATAAATAATCtgttaccttctaacaggatggcagcacgacaagcatacccataacatgatgcagtcaccactgTGTTGTATTGGTTTTTTCCCCAAACAACCCTTTGTTTTCAGGgcaaaaagtgaatttctttgccacattctttgcagtatGACTTTAGTgcattgttgcaaacaggatgcatgttttgggataTTATTCTGTAAGggcttcctccttttcactctttcatttaggtttgtattgtggagtaactacactgttgctccatcctcagttgtctcctatcacagtcattaaactctaactgttttaaagtcaccattggcctcatggtgaaatccctgagcggtttccttcctctctgacaattgcattaggaaggatgcctgtatctttgaagtgactgggtgtattgatacaccatccaatgtgtaattaataacttcttgctcaaagggatattcaatgtctgcttttttttatttttacccatctaccaacagatgcctccctggtctttgtggttaaaactgttttgaaattcactgctagaCTGAGGAACCATAGGTGATTGTATGggcggggtacagagatggggtagtcttTAAAACATCATGTTAAACCCTATTactgcacacagtgagtccatgtaacttagaATGCGGTATTTCAATGTGCCATAAAGGGTTGACTACTTATTGACTctagatatttcagcttttcatcttTATTCATTATTCAACAATTCCATTTGTTGAATTCAATTGTTCAAATGTTGGAATTGTTGAATATCTTGgccgtgttctgttataatctccacccggcacagccacaggccatccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctaggggagtttttcctagccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1887717 lncRNA upstream 7293 65514318 ~ 65514541 (+) True G1649280
TU1887713 lncRNA upstream 46208 65475374 ~ 65475626 (+) True G1649276
TU1887704 lncRNA upstream 56094 65464562 ~ 65465740 (+) True G1649267
TU1887683 lncRNA upstream 60370 65461077 ~ 65461464 (+) True G1649262
TU1886872 lncRNA upstream 70904 65448715 ~ 65450930 (+) True G1648766
TU1887729 lncRNA downstream 21287 65545072 ~ 65545336 (+) True G1649292
TU1887730 lncRNA downstream 22523 65546308 ~ 65546655 (+) True G1649293
TU1887732 lncRNA downstream 24002 65547787 ~ 65548042 (+) True G1649295
TU1887751 lncRNA downstream 46990 65570775 ~ 65571383 (+) True G1649306
TU1887754 lncRNA downstream 51937 65575722 ~ 65584002 (+) True G1649308
XM_036953841.1 mRNA upstream 230743 65250079 ~ 65291091 (+) False LOC110498315
XR_005037611.1 mRNA upstream 277541 65241682 ~ 65244293 (+) True LOC118941380
XM_036955414.1 mRNA upstream 282397 65229726 ~ 65239437 (+) False nat8
XM_036955427.1 mRNA downstream 25741 65549526 ~ 65808375 (+) False LOC110498653
XM_036955429.1 mRNA downstream 25741 65549526 ~ 65808375 (+) False LOC110498653
XM_036955430.1 mRNA downstream 25741 65549526 ~ 65808375 (+) False LOC110498653
XM_036955432.1 mRNA downstream 25741 65549526 ~ 65808375 (+) False LOC110498653
XM_036955426.1 mRNA downstream 25742 65549527 ~ 65808375 (+) False LOC110498653
TU1887705 other upstream 58380 65461773 ~ 65463454 (+) True G1649268
TU1886551 other upstream 540891 64980364 ~ 64980943 (+) False G1648608
TU1886125 other upstream 1392766 64128208 ~ 64129068 (+) True G1648296
TU1885128 other upstream 2130002 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 2317777 63202756 ~ 63204057 (+) False G1647477
TU1887728 other downstream 20592 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 54654 65578439 ~ 65582582 (+) True G1649309
TU1887771 other downstream 77175 65600960 ~ 65602416 (+) True G1649319
TU1887742 other downstream 210829 65734614 ~ 65812816 (+) False LOC110498653
TU1888162 other downstream 447670 65971455 ~ 65976240 (+) True G1649614

Expression Profile