RNA id: TU1889105


Basic Information

Item Value
RNA id TU1889105
length 600
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1650373
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 66797225 ~ 66797824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaactatacattcatgtacatactacctcaattgggccgactaaccagtgctcccgcacattggctaaccgggctatctgcattgtgttccacccaccacccgccaagccctcttttacactactgctactcatCGTatacgctagcgtcccatctggccaacatccagtgaggttgcagagtgccaaattcaattacagaaatgctcattataaaaattcagaaaacaaaacatgttttacataggtttaaagatcaacttcttgttaaaccaaccacagtgtcatatttataaaatgcttttcggcgaaagcataccttgcccagaacatacctagcccagaacatagcccagttgacaaattattacaaacagtaaccagccaagcagaagcgttacaaaactcagaaatagagataaaatgaatcccttacctttgatgatcttcatatggtggcaatcagaagacattcatttactcaataaatgttccttttgttcgatgaagtctctttatatccaaaaacctccgttttgttagcgcgttttcttcagtaattcacaggctcaaactcagtcaaaacaatcagacaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1888954 lncRNA upstream 33805 66758695 ~ 66763420 (+) True G1650249
TU1888940 lncRNA upstream 50345 66745789 ~ 66746880 (+) True G1650241
TU1888934 lncRNA upstream 55286 66736445 ~ 66741939 (+) True G1650236
TU1888900 lncRNA upstream 106754 66676088 ~ 66690471 (+) True G1650205
TU1888898 lncRNA upstream 125125 66666493 ~ 66672100 (+) False G1650203
TU1889128 lncRNA downstream 18888 66816712 ~ 66817038 (+) True G1650395
TU1889130 lncRNA downstream 20885 66818709 ~ 66818918 (+) True G1650397
TU1889143 lncRNA downstream 22717 66820541 ~ 66849539 (+) False G1650401
TU1889154 lncRNA downstream 36087 66833911 ~ 66837919 (+) True G1650404
TU1889155 lncRNA downstream 61544 66859368 ~ 66861360 (+) True G1650405
XM_021593675.1 mRNA upstream 73629 66718434 ~ 66723596 (+) True cfd
XM_036955436.1 mRNA upstream 418051 66371026 ~ 66379174 (+) False LOC110498313
XM_021574945.2 mRNA upstream 450224 66345732 ~ 66347001 (+) True LOC110498312
XM_036955433.1 mRNA upstream 988850 65550013 ~ 65808375 (+) False LOC110498653
XM_036955431.1 mRNA upstream 988851 65549528 ~ 65808374 (+) False LOC110498653
XM_036955440.1 mRNA downstream 144889 66942713 ~ 66975247 (+) False LOC110498318
XM_036955441.1 mRNA downstream 144889 66942713 ~ 66975247 (+) False LOC110498318
XM_036955442.1 mRNA downstream 144889 66942713 ~ 66975247 (+) True LOC110498318
XM_021574953.2 mRNA downstream 189007 66986831 ~ 66995509 (+) True LOC110498319
XM_036955450.1 mRNA downstream 203511 67001335 ~ 67087574 (+) False jade1
TU1888162 other upstream 820985 65971455 ~ 65976240 (+) True G1649614
TU1887742 other upstream 984409 65734614 ~ 65812816 (+) False LOC110498653
TU1887771 other upstream 1194809 65600960 ~ 65602416 (+) True G1649319
TU1887755 other upstream 1214643 65578439 ~ 65582582 (+) True G1649309
TU1887728 other upstream 1252170 65544377 ~ 65545055 (+) True G1649291

Expression Profile