RNA id: TCONS_00050600


Basic Information

Item Value
RNA id TCONS_00050600
length 2094
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_025733
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52092599 ~ 52110809 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCATACGGACTGAACAAAATGGTCTTGGTTCTGATTCCTGCCTCCTAAGCGAAACACCACTGTGAACTCAGCTAACTTACATCAATAAACTACAGTCCAAGTAAACTGCAAACACCAGCAGAACCATGccaaATCAAGAGCCCACAGCAGCATTTAAtcctatttatttgtttctttttatctCTGTTGGATTGaacatatttttagtatattCTGGATACTTGAGCACTGATTATAACACATTGTCATACACCACGACTTGTACAACTTTGAAAGAGAAGCCTCTGGAAAACAGCACTATCCTGCTCATATGGATTTGGCCATTTGgaaaaaaatttgatttaaattcTTGCAGTGCAAAATTTAATATAGATGGCTGTCACTTGACTGTAGATCGAGAGCTTTACGATGATGCTCATGGAGTACTGATAAATCACAGAGACATTAAAAATGACCTGTCAAATTTACCCACAAAGCCACGACCCTTCTTCCAGAAATGGATATGGATGCACTTTGAGTCCCCAGAAAACACAAGACGACTCGACGGTCTGAACAACCTGTTTAATGTGACGTTGAATTACAGACGGGATGCTGATATTGTGCTTCGTgaacaatttattattaaaagtgaAGATACTGAGGATAAGATTTTCCCACAAGTTCTGGACAAGAAAGACAAATTAGTTTGCTGGATAGTGAGCAACTGGAATGAGAGGCATGAACGGGTAGCTTATTTTAATGAGCTAAAAAAGCACATCGACATTTATGCCCTTGGGAGACATTTTGGGAAACAATTAAGTGACACGCAATACAAGGAAACATTAACTAGATGTAAGTTCTATCTTTCATTTGAGAACACAAACCTTCACTACGACTACATCACAGAAAAGCTGTTCAATCCTCTCACCCTTGGATCAGTGCCGGTGGCTCTTGGGGCTCCAAGATACATATATGAGAGATTTGTGCCGAAAGATGCTTTCATCCACGTGAAGGATTTTTCCAGCCCTCAGAAACTGGCTGAACACCTGCTGTCACTGGACAAGAATGTCGACGAATACAAAAAGTATTTTCAGTggagaaaacactttgaaattaaacTTGTTAGCTATCCTGAAGAGCATGCGTGCCGTGCCTGTCAGTATATAAGAACAAAAAAAGACTACCAGGTGTTTAGAAACCTTAACAATTGGTACTGGGATGCCATCAATGATGGGACCTAAATGGGATGGGTTTTGCAATTGAGGCAGCTCTTAAAACGGTTGACTGCCTGGTCAATGCACTGATGTACTTTCTGTGAAATGATAATTCATTAATTGCCAAGATAGGGATTAGATGCTGATACATCTAAGCAAATCCCATAATTATCACCACTAAAGGGAGTAGATTTGCAATCCTCTTTTTGCttccattattattttttgtgataaCTGACATCTAAAGCCCAATTTATACTTCAGCATGGAATGATTGCTGTATCCCACTGCACATTCCGTAAACGAAGCTGATGCTGTTTTGAGAATTTATAATTCAGTGGTCAGACTTCTGAAATGCAGCATTTGGCAGTGGGATTTCTATCGTGTCAAGTTTACTTTCCGGTGGTTGGGTTTACGGTGCATTTGTGTTTATTGCTTCTGTAAAAAgtagggaaaaaaaacttgcctCATTCAGGGACGAAAGTGTCAGCAGTGAGAGTTTAAGTTGTCACTTATTAAACTTTCAAGCCCACCCCGCCCACATTTTTCACAACTGTACTAAGCCAGCCAATCATAGGTCTTGTCATTGTGAtgtgtaattacatttttgagaggtgcgcatggTTGAATGACGAAGGTTATGTGACTGTGTAAAGGCTACATGTCAACCACCTGCACTCAACATAGAAGTATAAATTggccttaaaggaacagttcactcaaaatttcAAATGCTTTTATTTACTCAAACTTTGCTAGTTTCAAACCTTATTTCTTTTTGCTTTTGTACAGCAAttatgtgcataagtaatccttttatatgtctgacgtggtccaaacttaattacagcacgctagactacacagaacctaaaaggtacactttcaaaatttattcc

Function

GO: NA

KEGG:

id description
ko00515 Mannose type O-glycan biosynthesis
ko00601 Glycosphingolipid biosynthesis - lacto and neolacto series
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series
ko01003 Glycosyltransferases

Ensembl:

ensembl_id ENSDART00000104648

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052796 lncRNA upstream 191700 51895324 ~ 51900899 (+) True XLOC_025731
TCONS_00052377 lncRNA upstream 333888 51758345 ~ 51758711 (+) True XLOC_025730
TCONS_00050592 lncRNA upstream 645603 51417422 ~ 51446996 (+) True XLOC_025726
TCONS_00052376 lncRNA upstream 1069542 51011289 ~ 51023057 (+) True XLOC_025725
TCONS_00052375 lncRNA upstream 1081029 51011289 ~ 51011570 (+) False XLOC_025725
TCONS_00052797 lncRNA downstream 113306 52224103 ~ 52264146 (+) False XLOC_025735
TCONS_00052378 lncRNA downstream 119069 52229866 ~ 52230153 (+) True XLOC_025735
TCONS_00050604 lncRNA downstream 256505 52367302 ~ 52379472 (+) True XLOC_025737
TCONS_00052798 lncRNA downstream 266781 52377578 ~ 52389039 (+) True XLOC_025738
TCONS_00052379 lncRNA downstream 279455 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00050599 mRNA upstream 2799 52078798 ~ 52089800 (+) True XLOC_025732
TCONS_00050598 mRNA upstream 144573 51685061 ~ 51948026 (+) True XLOC_025729
TCONS_00050597 mRNA upstream 165672 51685061 ~ 51926927 (+) False XLOC_025729
TCONS_00050596 mRNA upstream 199862 51684963 ~ 51892737 (+) False XLOC_025729
TCONS_00050595 mRNA upstream 415017 51660158 ~ 51677582 (+) True XLOC_025728
TCONS_00050602 mRNA downstream 34714 52145511 ~ 52166846 (+) True XLOC_025734
TCONS_00050603 mRNA downstream 164894 52275691 ~ 52294508 (+) True XLOC_025736
TCONS_00050605 mRNA downstream 331305 52442102 ~ 52465596 (+) True XLOC_025740
TCONS_00050606 mRNA downstream 357082 52467879 ~ 52471761 (+) True XLOC_025741
TCONS_00050607 mRNA downstream 362873 52473670 ~ 52474770 (+) True XLOC_025742
TCONS_00050578 other upstream 2017409 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 2960122 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 4631996 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 6457413 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 7204446 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050613 other downstream 509261 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 718115 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 1956726 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 3188246 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 3372716 55483513 ~ 55483647 (+) True XLOC_025789

Expression Profile

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