RNA id: TCONS_00050598


Basic Information

Item Value
RNA id TCONS_00050598
length 3391
RNA type mRNA
GC content 0.44
exon number 13
gene id XLOC_025729
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 51684963 ~ 51948026 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTTTTATCTGAAGATTCCACAATGTCTCGCACCGACGAGGTCCACCGCATTTCGGAGAATGTCTATAAGAACATCATGGAACAGTTCAATCCCTGTTTGCGGAATTTCATCGCAATGGGCAAGAACTACGAGAAGGCTCTCTCCAgtgtgACGTTTGCAGCGAAGGGCTATTTTGATGCTCTGGTGAGGATGGGAGAGCTGGCCAGTGAAAGCCAAGGATCTAAAGATTTGGGGGACGTGCTTTTCCAGATGGCCGAGGTTCACCGGCAGATTCAAGTGCAGTTAGAGGATATgTTGAAATGTTTCCACAATGAGCTGCTGTCGGAGCTGGAGAAGAAGGTGGATTTGGACGCAAGATACTTGACTGCGGCTCTTAAGAAGTACCAGATTGAGCACAAAAGCAAAGGCGAGAGTCTGGAGAAATGCCAGGCTGAGCTGAAGAAACTGCGGAGGAAGAGCCAGGGCAGCAAAAATCCCTCCAAGTACGGCGAGAAGGAGTTGCAGtaTGTTGAGGCCATCAGCAGTAAACAGAGTGAGCTGGATACCTTCATTGCAGAGGGCTACAAAACAGCGCTTTCAGAGGAACGTAGGAGATACTGTTTCCTGGTGGACCGCCAATGCGCTGTAGCCAAGAACAGCAGCGCCTACCATGGCAAGGGTAAGGACTTGTTAACCCAGAAGATCCCGGTGTGGCAGCAGGCCTGTTCAGACCCCAACAAGCTGCCAGACAGGGCCATGATGCTCACCCAGCAGATGACCTCTGGAACGAGCACCCTCCTCTCCAGCCCTCTGCACTCATCCAAGGGGAACCTGGTCATCTCAGATCCCATTCCTGGAGCACAACCGCTGCCCGTGCCCCCCGAACTAGCTGCCTTCATGGGAGGTGGCCTGGGCCAGGGGAGGCTAATGGGTCCTAATGGTATGTCTCTGGTTAATGGGACAACAGGGGTCCATGGAGATGATTACTGGACAGACGGAGTGTCTCAGGGAAGACCACCTTCCCCACAAAATCCATCTCAAACACAGAGCCAGCCCCAGAGACAGGTCAGCGACGTCTATTCCAACACCCTGCCTGTCCGCAGGCCTCAGCCCGCTAAAAACAAGACCACTGTGGGAGAGACACGAACTTTGCCCAGGTCAAGTTCTATGGCGGCTGGTCTGGAGAAGAACGGACGCTCTCGTGTACAGGCCATTTTCTCCCATGCCGCAGGCGACAACAGCACCCTCCTCAGCTTCACCGAGGGTGACATCATCACCCTTCTGGTGCCAGAGGCTCGGGACGGCTGGCACTATGGAGAGAATGAGAAAAACAAGATgcGTGGCTGGTTTCCTTTTTCCTACACCCGAGTGCTGCCTGACAGTGATGGCGAAAAGTTAAGAGTCAATCTTCACCATGGGAAGAGCAGCAGCACAGGAAACCTGCTGGAGCGGGAGGACATGTCCTTGCCCATGCCTGACTATGGGTTGACTGCCCGACTGTTGGCACAGAGCCTTACACAGAGCCGACAGCGTCCCTACAGCATGGCAGGCTTtgcacagCACAGGCAGGCGAGCATGAGgaagacaaaagtgaagaggccAGAGAAAGAGACGGCCACCACTGCGAGAGACGACGGCCATGACAGCTCACTCAGCGGAGAGCCACCTGCAGTACAGAAAATACATACTCAGGGTTGAAAAACAATACTGGACTCCGGAGTTCAGGTCACGAAAATCGCTGACCATGTTCAAAAGTGAGTAGTGTTTTATTTCTGTGGTGTTAAATAGACCTTAAATGTCCTGTGAAGTGCATTTTGTTCAATGTGGGACACAACTGAAttctatctgcttgttaagtcctGACGTAtcggtgacgtatggaatactgtttcaaGGTCCAAGCCCTGCTCATTTCAATTGGGAAAATTTTCGTATATGACCACTTTTTTTAGTCATACCACACattaatgtaaattttatataaaatcatattgTACACATCAGTCTCTGTGCTTGCTGGATCTcagacatcaatattttaacaattgaaaaaaaaaagttatcactTTCTGtccatctgatattaggcatggacatatatattgcgatcgtggtTTTCGAAAGTAATGCAtcaatttgtaaatgtttattattaccatttgttgagtctctccatacagtttgatatgacACTTGGACTTATAATAACTTAACAAGCTTAACAAGCAGATAATAACTAAAACATGAAGACAGGGTGGGACATAACGTAGCTCAGcccctttttaaaaacacagccaatTCTGTCATGAACACTCTTGGGATATAGTATGGTAGTTGATATAGttgatatattgatatatttgGTCTTGACGGTatagatctgctacgctgctgctgcaTTGATTATTATGGCAGACCAAGTACAGAGAgctgctactgccagtatatacacagacatgccatctgagaatataacacgctgctgctgctgcaaacataatatagATGTAACCCCCATAGCAGATATAAACACAGGTGAAGTTGGGGTGGAGGAGGATGTCTGAAAATTTAAGCTGATTCCAGCAAGTTCATGGGCTGCCGAGGTGACAGCAACCAATCTTCTGCTCCAAGTCGTTAATGACGCAGGAGCAGTTTAGGTGACCTatcagcagtggtgtaaagtaacaaattaaaaatagtccAATTACTCTAATTGAGTAGTTgagcgccattgtgccaaaactatttgtaaaattatatttaatagaagtttcaaataataaaattatttatttttttgttaaaaatgtttattttgcattttatattactataatattaaatatagtataattattaaataagaaatataCTACCCCTCCACTTCTATTGACCATTTGATTGATCcgttgcagctggatattattgtaTTGCTCGgtcacatgttcaaaatggaGAGAATGTAGAGACGTGGAGCGCAAAATAGaatacttaaaaaacaacaacaaacaatgccttaaaatgaaaactgcaaTGACAAATTGGATAATAAGAGATTATTatccactattattattattatacactatTATTATCATACTTTTAATTAACTTCTAATGTTTCTAAGCcatataattaattattcattatcgcCACCTAGTCACTTTCACTTTTCAAAGAAATATTACAAAtgcgggagaaatacgggaaaatacatACACAGAAAAGCGCATAGAATGATAAAATACGATAGAATTAATAAGGCAAAAACGGGCGGGTTTATAGGTATGAGTTGCATACGATGGCACACACATTTggattcaaaatcatttaaaacaataaaatgcagTCACACTGCCAAGTGTAAAGTTCATGTAGATGTAGATTTCAAATCATacgtacagttgag

Function

GO:

id name namespace
GO:0051764 actin crosslink formation biological_process
GO:2000251 positive regulation of actin cytoskeleton reorganization biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007009 plasma membrane organization biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-2756 Predicted to enable cytoskeletal anchor activity. Predicted to be involved in actin filament organization and positive regulation of cytoskeleton organization. Predicted to act upstream of or within plasma membrane organization and regulation of actin cytoskeleton organization. Predicted to be located in several cellular components, including cytoskeleton; filopodium; and ruffle. Predicted to be active in cytosol and nucleoplasm. Human ortholog(s) of this gene implicated in Gilles de la Tourette syndrome; attention deficit hyperactivity disorder; and autism spectrum disorder. Orthologous to human BAIAP2 (BAR/IMD domain containing adaptor protein 2).

Ensembl:

ensembl_id ENSDART00000159493

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050592 lncRNA upstream 238065 51417422 ~ 51446996 (+) True XLOC_025726
TCONS_00052376 lncRNA upstream 662004 51011289 ~ 51023057 (+) True XLOC_025725
TCONS_00052375 lncRNA upstream 673491 51011289 ~ 51011570 (+) False XLOC_025725
TCONS_00052795 lncRNA upstream 875868 50808637 ~ 50809193 (+) True XLOC_025724
TCONS_00052794 lncRNA upstream 888844 50795321 ~ 50796217 (+) True XLOC_025723
TCONS_00052797 lncRNA downstream 276077 52224103 ~ 52264146 (+) False XLOC_025735
TCONS_00052378 lncRNA downstream 281840 52229866 ~ 52230153 (+) True XLOC_025735
TCONS_00050604 lncRNA downstream 419276 52367302 ~ 52379472 (+) True XLOC_025737
TCONS_00052798 lncRNA downstream 429552 52377578 ~ 52389039 (+) True XLOC_025738
TCONS_00052379 lncRNA downstream 442226 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00050595 mRNA upstream 7479 51660158 ~ 51677582 (+) True XLOC_025728
TCONS_00050594 mRNA upstream 7721 51660158 ~ 51677340 (+) False XLOC_025728
TCONS_00050593 mRNA upstream 27339 51563695 ~ 51657722 (+) True XLOC_025727
TCONS_00050590 mRNA upstream 903556 50602866 ~ 50781505 (+) False XLOC_025722
TCONS_00050599 mRNA downstream 130772 52078798 ~ 52089800 (+) True XLOC_025732
TCONS_00050600 mRNA downstream 144573 52092599 ~ 52110797 (+) False XLOC_025733
TCONS_00050601 mRNA downstream 145468 52093494 ~ 52110809 (+) True XLOC_025733
TCONS_00050602 mRNA downstream 197485 52145511 ~ 52166846 (+) True XLOC_025734
TCONS_00050603 mRNA downstream 327665 52275691 ~ 52294508 (+) True XLOC_025736
TCONS_00050578 other upstream 1609871 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 2552584 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 4224458 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 6049875 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 6796908 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050613 other downstream 672032 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 880886 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 2119497 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 3351017 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 3535487 55483513 ~ 55483647 (+) True XLOC_025789

Expression Profile

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