RNA id: TCONS_00050602


Basic Information

Item Value
RNA id TCONS_00050602
length 2009
RNA type mRNA
GC content 0.41
exon number 12
gene id XLOC_025734
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52145511 ~ 52166846 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGTTGTTATAGCCAAATTTATTCAAGATTTTGACATTGTTTTGGTTGGCACATTTAGACCAGTTATTTAATGTCaatattgctttattttgttattgtctTGTTGATTTCTCTAATTGCAGATTTAAAAGGAGCACTGCAGGAAGGATGCACGAATCATACTGCTAAAGTATGTCTTGAAAATCTTCTTGAGCAGACTGAGAACATTAAAGATGAAGAGCTTTCTTTAGATACGGTGACCAGCCTTTTAAGTATGGTCCTCGATGCTGCAGTAAATATTCATATGTCATCATCATCAGCCAACCCAAATGAACTGACCTCATATGGAAACCGTGTGTTGATAAACAACGAGGAACTCATGTCTACATTAGTGAAGCAGACAGACACAAGTGCCAATGTCAGTTTTACTCTTGCTGATGTAGAGGGACGAGTCTTCATGGTTGGACCACATGTCACTTTAGATGAAATCCCTCGACTACACACAAGAAATTGCTCTATTGACATCGATCTCATTGGCATCGCCAATAACAACAATGGAACACGATCAGCTGCTGTGATTTTTTTGGGCTACAACACAATGGAGAATCTACTAAAGGCCGACTTCTTCAACGCAACAAATGATACAGTTAACACCATGATGTCCTCTGTGATCTCAGTGACTCTTCCCAAAACAACCAACACTGCACTCAGCAAACCAGTCAACTTCACCTTCAGACACATCAGAGAGTTTGACCCCAGCGGTTCTTTTTCCTGTGTTTACTGGAATATCAGCAAGTGGATTGTAGATGGTTGTTCTGTGTTAAACACCAACAGAAGCTTCACTGTGTGTTCCTGTGTTCATCTGTCCACATTCGCTCTCATCATGCAAACCCGCAGTCATCCACCAGAGAGCGACTCTTTGCTGAATGTGCTGAATGTGGTGTGTGTGATCGTGGGGCTGCTGTTCTTCAGTTTGGCCTTGTTGACCTTTACTCGTTGTCAGTGGAGTCCTGGAGTGAATAATGTGGCCCGAATCAACATCTGCATCAGTCTGCTGTTGGCTCACCTTCTGTTTCTGCTCACACAACAGTTCCTTAGCCTCATTCGCCGTCAAAAGGTGTTGTGCATGCTGATATCCGGCCTTCTGCACTTCCTCTTTCTCTCCGGGTTTGTGTGGATGTTCATTGAAGCTGTGCTGCTCTTTATCTGTGTAAAGAACCTCTCCCAGATCAGCTCTCAAATGAAGAATGTGCTTCGCAATAAATTGCTGTGTGTGATTGGATATGCAGTTGCTCTGGTTGTGGTGAGCATTTCTGCTGCAGTGGTTCCCAACGGCTACGGCAGTGAAAAATGCTGGATTCAAATGCATAAAGGCTTCATCTGGAGTTTTTTGGGACCTGTTACCATCATAATAGCTTTAAACGTAATACTCTTCATCAGCATCGGGTTCAGTTTAAAGTCAGCCTTCAAAAAACTGAACGCTGACGTTTCACAGCTGAATCAAACCAAGATTGTAATGTTTAAAACCCTGGCTCAGTTTGTGGTTCTCGGTTGCTCCTGGATTCTGGGTTTCTTCACTAATAGCAGTAAAGTGCTGGAGATCCTATTTCTGATCTTGAACTCCCAGCAGGGAACCTTCATCTTCCTCATCTACTGCGTCCTCAATAAAGGGATCAGGCAAGAGTACAGGAAGCTCTTCACATCTCTTTACTCTGGACTAAAACCCAAGAACTTCAACTGGTCCTCAGAAAACACTGAGGACAGTACAATTCACGGTCTGCAAATGAAGTGACGTTCTatcattatttgcatattaagcGTGACAGCTATGACTTTCCCTATATAGCATTTTTTAACACATATAATATATTGTTGATTTTATAGAAAGCATTGTTGTGATATCAAATCATCTTATTGAatcaaatttttttcttaaaaacatcaaaaatagcCCATATCTTAACATAGCATCACACAATCCAAACTTTGCTATTGacttatggaaaaaaaaatacagtgttttttataa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-49 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDART00000078485

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052796 lncRNA upstream 244612 51895324 ~ 51900899 (+) True XLOC_025731
TCONS_00052377 lncRNA upstream 386800 51758345 ~ 51758711 (+) True XLOC_025730
TCONS_00050592 lncRNA upstream 698515 51417422 ~ 51446996 (+) True XLOC_025726
TCONS_00052376 lncRNA upstream 1122454 51011289 ~ 51023057 (+) True XLOC_025725
TCONS_00052375 lncRNA upstream 1133941 51011289 ~ 51011570 (+) False XLOC_025725
TCONS_00052797 lncRNA downstream 57257 52224103 ~ 52264146 (+) False XLOC_025735
TCONS_00052378 lncRNA downstream 63020 52229866 ~ 52230153 (+) True XLOC_025735
TCONS_00050604 lncRNA downstream 200456 52367302 ~ 52379472 (+) True XLOC_025737
TCONS_00052798 lncRNA downstream 210732 52377578 ~ 52389039 (+) True XLOC_025738
TCONS_00052379 lncRNA downstream 223406 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00050601 mRNA upstream 34702 52093494 ~ 52110809 (+) True XLOC_025733
TCONS_00050600 mRNA upstream 34714 52092599 ~ 52110797 (+) False XLOC_025733
TCONS_00050599 mRNA upstream 55711 52078798 ~ 52089800 (+) True XLOC_025732
TCONS_00050598 mRNA upstream 197485 51685061 ~ 51948026 (+) True XLOC_025729
TCONS_00050597 mRNA upstream 218584 51685061 ~ 51926927 (+) False XLOC_025729
TCONS_00050603 mRNA downstream 108845 52275691 ~ 52294508 (+) True XLOC_025736
TCONS_00050605 mRNA downstream 275256 52442102 ~ 52465596 (+) True XLOC_025740
TCONS_00050606 mRNA downstream 301033 52467879 ~ 52471761 (+) True XLOC_025741
TCONS_00050607 mRNA downstream 306824 52473670 ~ 52474770 (+) True XLOC_025742
TCONS_00050608 mRNA downstream 308212 52475058 ~ 52490051 (+) False XLOC_025743
TCONS_00050578 other upstream 2070321 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 3013034 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 4684908 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 6510325 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 7257358 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050613 other downstream 453212 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 662066 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 1900677 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 3132197 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 3316667 55483513 ~ 55483647 (+) True XLOC_025789

Expression Profile

//