RNA id: TCONS_00051608


Basic Information

Item Value
RNA id TCONS_00051608
length 3511
lncRNA type intronic
GC content 0.39
exon number 2
gene id XLOC_026483
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32598644 ~ 32603191 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agaCGCTGTTCACAGCTTCCCATTACAGCCGGGCTTCTCTTTTTGTACTTCAGCTTcagataataattaatatataaacaaacagattCTTGCACGTTTTTAATCTTTCAGCTGCAGCTTCTCTCGCCCAGATGCAGAGAGTGATATGACATCTTCAGAGGGAGGAGAAACGAATGAGGGCATGTAAGACTGAAAGAGAGGAAGAGAAATTAACAGGATATAGGTGTGCACCGCATGTATGAGTGTGTAGATTTGTAGATGTGCAGTTTGGTGTTGGTGGTGGTCGGAGCTTGCAGTGACTTTACTCTGAAGTAATGTCATTTCAAAGCTGATATCCCTCGTGCGACACTAAAAGACAGAGAGAACAAGAAAGGGGAAGAACAGGGCTGTGTTAAACTTTCCGGTCCAGATACACGCTAGATTACCTCAGCAAAACACCAAACAAGCACAAAATAAGCAGAATTTGTTTGGTTGACTACTTTCTATAAATGAGTCTGGATGCTTTCTGCATTTTTGATCACATTCACAAGCCTCAAAAGTGGATCATCAAGAACAACAGCAGCTCAGCTGAGCACATACTTCATACAAGCTACTACTTTGAACGGCTTTCCATCCAGCGTGCACATCATGGTGCTCGTCTTTAGAAATCTGCTACTGTTTCTTGCTCTCTGGCCCTGTTTCAGGTCCACCAGTGCACAAGAGTTTGCAGTGACAGATGATAATATCACCACCGCATTACCTGATAATGTCACTGTGGAGGACACAactgttctgtcatcattttatcATGTCACTGATGAAGCGATCAGTTCTGCACCAGTAGATCTTGTCACAGATGTACAGACGGAACCAGACACATATGATCTGCAGACCACACTTGCGAGCACAACAGGCACCATGCAGGAGACAACAACTATGAATACTACACCCCTCGGCCCTGTTATTCAACAAACAACACCAGAATCTGCTCCTGAAACAACGGCAACAGCTGAAATTCAGCTGACCACAATGACCAGCATTACTCTGCCTGTTTATATGGAAACATTAATGACTGAACAGAAAACTCCAGAAGCCACAACCACGAGTCAGTTTGAAACAACCGTTTCCTTCAATGTGCCAATGCTGACCAGTCCTTCAGAACGTCCAACAGATTTCATCACGACACGAGCTTTGGCCATGATGACGTTTGATTCAACAGAAGATCCCTCAACCAATATGATTGAACTTCCTACACATGAGGTTTCAAACAAATTGTTTGACCTTGTGGACAACAGCACGACAACCCCCACTGAAACTCCAACATCCGCTTCACAATTGACTGAAAATGAGCCTATTATAAATGGAGTGTTACATGACAACACAGTCTCTGAAGATTTCATGCCTGTCACAAGTGTTGTTAACGTTAAGCAAAGTACTTCTCATGAAGAAACCAACTGGTTATTAATAATCATAGTGTGTGCGATCGCTGCTTGTGTGCTATGCGTTATCGTGATACTGTTCATACAACAGCGAAAGAAAAAGGCCTCTCGGACATTTGGCCCAGCCTATATGAATGGACAAAGCAAACGGTCTAAGAAGAAAAAAGGGGCGGAGGATGACAAGTGGGCAGGGCCTGTGAATCTGGAGGCGGGAGCTGAATGTGATGCTGACGTCCAGGAGGGTCTTCTGCATAACGATGAGAAAAAGGACGGAGACGATGTGGTGCTCAGTACATTCGCCACCATGGATGAAGATGCCATGTCTGATGGAGGAGTGGGTGGAGAAGGAACCAAAGAGGCTAAGAAATGGGAGGAGCAGGAACCTATGCCTTTCATAGATGAAGATGTGGATGAAAATAAGGTGGGAAAAACACTGTCCGAAAATGGGAGTTCGAAGGGAGACGGGAAAAGTGAAGAGAACATGAATGGAGGAGAAACGTTCTGTCTTACCACGGCTGTCTAAAAGTCTTCTGGGAATCTGTATCTTGTATGTGTGTAACGGTGCCATAAACACGGACTATATCttacaaatgtgtatatattatttgaTTATCATGCTGATTCTGTTTCAGATTTGTGTATAATACTGAAAAGCACAGGTGACAAAACACTCAGTAGTGTGAACGTATGAGGTACAAATCATCAATTTTTAAAGCTAGCATCTTTCTGTTGACTAATACAGTGAATTACCTTGACCATCTGAATGATTAGCCAAATTTCCATTGGAAAATCTAGCAGTTGTGTCATTTGCTATTGAAATTTAGCAAACAATAGAGGGGGAAATGTTCCCAACACTCAAATACAAAATGTCTGAATGAATtagatttataataaaaatgcatctATTCAAAATGTTTGCTATCGATGTGGACTTCACCTGCTTTCTCCCAGTTCACACAGGGATGAGATTAGTGACAACACAAGTATATTTACTAATTACAGCAGACAATGTTAATCTTCAAAATAACCATGCAGCAAAGATTTTCTGACATTATGAGAATGAATTCACAAAATATGCAATCAAATGACCTAATATATAGAGGGAGTTTCTGACTTTGATAGAAATTATGTGTGTAATTGAATTAAATCCATTGAATTTTAGTAAAGTGTTCTTTTTTAAAGAACATGGGTTAGGAAATTTAAAACAAGATATTTATTCTGTTTCATTACCAAGCTGTTTGTGAATGCAAAAGTTCTGCCATACTAAAATTGCATCAAAAAGATACTGTCACCTAAAACAGCGAAAAATAATTCTGACCAGTTCCAGTTTAACGTTAATAACTAATCTATGTAGATTCATACAAATTTGCATATACATTAATGAACTGGCAGTATTTGCTAACTACCAGTAAACAAGGTCTGTTTTTACACTTCCTGGGTCTATTGACACATTTTAACTTTTGTGTCAATGACATCACTGTTGCAAATGAAACATTTATTCTAGTGTGACTTACAAAAACTCCTGCTATCGTCACTGAATGAATATGttgcattccgctgtggtgaacccagactaataaagggagtaatccaaaaagaaattgaatgaatgaataattgttggGGTGATATTGTAGCGAAGTGCTTctagcataaaatataataaaaggcaGATATTCAGTCACAGATATTGAATTATCTAATgtaaaacaacattaaacactAAATAAACCAAATgcaattcatgtttgttaatgctGTTAAAAAAGCAATATCTTTCACGTGAATCATTTAAAGTCACTTGTTTATTCATATGTTTACACAGTAACAGACCATTAAACCACATGCCACCTTTAACTCCAATATGGTGAAACTGTTATTAaaccacaaatctcatgtattccAAAATGTAGTGCCTGTGAACTGCAGCAATGTGACTATTGGATGCACACACTGTGATGTTCTGTTGATACTGTGCAGCCAAAttaatgtataatgtatttaAACCAACGATCAAAATTTTTTTGccatgttttcaaactatttaacaaaaattagctaaaactagggctgcacaatatattgtttcagca

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0048468 cell development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007507 heart development biological_process
GO:0007517 muscle organ development biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031033 myosin filament organization biological_process
GO:0031034 myosin filament assembly biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0042246 tissue regeneration biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0008015 blood circulation biological_process
GO:0030029 actin filament-based process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005576 extracellular region cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051605 lncRNA downstream 26592 32565194 ~ 32572052 (-) False XLOC_026481
TCONS_00053062 lncRNA downstream 26785 32565194 ~ 32571859 (-) False XLOC_026481
TCONS_00052475 lncRNA downstream 27016 32570759 ~ 32571628 (-) True XLOC_026481
TCONS_00051602 lncRNA downstream 137671 32459183 ~ 32460973 (-) True XLOC_026479
TCONS_00051595 lncRNA downstream 260954 32325134 ~ 32337690 (-) False XLOC_026477
TCONS_00053063 lncRNA upstream 251970 32855161 ~ 32859347 (-) True XLOC_026488
TCONS_00051626 lncRNA upstream 321348 32924539 ~ 32925497 (-) False XLOC_026492
TCONS_00051645 lncRNA upstream 480797 33083988 ~ 33113683 (-) False XLOC_026498
TCONS_00051646 lncRNA upstream 480797 33083988 ~ 33259621 (-) True XLOC_026498
TCONS_00053064 lncRNA upstream 697003 33300194 ~ 33301311 (-) False XLOC_026499
TCONS_00051606 mRNA downstream 2250 32587010 ~ 32596394 (-) False XLOC_026482
TCONS_00051607 mRNA downstream 8480 32587013 ~ 32590164 (-) True XLOC_026482
TCONS_00051604 mRNA downstream 57572 32536919 ~ 32541072 (-) True XLOC_026480
TCONS_00051603 mRNA downstream 57611 32535986 ~ 32541033 (-) False XLOC_026480
TCONS_00051601 mRNA downstream 126489 32458720 ~ 32472155 (-) False XLOC_026479
TCONS_00051609 mRNA upstream 65 32603256 ~ 32637678 (-) True XLOC_026484
TCONS_00051610 mRNA upstream 4589 32607780 ~ 32611833 (-) True XLOC_026485
TCONS_00051611 mRNA upstream 209857 32813048 ~ 32817274 (-) False XLOC_026486
TCONS_00051612 mRNA upstream 209857 32813048 ~ 32818607 (-) True XLOC_026486
TCONS_00051613 mRNA upstream 218014 32821205 ~ 32831429 (-) False XLOC_026487
TCONS_00051585 other downstream 411259 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 1797986 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 2110550 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2728520 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2729912 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051635 other upstream 369783 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 821001 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1345478 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1419974 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1432001 34035192 ~ 34035631 (-) True XLOC_026534

Expression Profile

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