RNA id: TCONS_00051613


Basic Information

Item Value
RNA id TCONS_00051613
length 5175
RNA type mRNA
GC content 0.37
exon number 3
gene id XLOC_026487
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32821205 ~ 32831971 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGATCCATAAGAAGATTCTAACCCATTACCTGTCCTGCACTTCACCTGTAGATAAGGAGGGATACCTCTACAAAAAGAGGGAGAGGAACACCACGTACCTGCGCCGCTGGTTTGTGCTGAAGGGGAATCTGCTGTTTTATCAGGAGCGTCCGGGTGATCGTAACCTGCTGGGTGTGATTGTGCTGGAGGGATGCATGGTGCAGGCGTGTGAGACGGACGGTCAGTTCTGTTTCTCTCTGGTGTTCACTGGACCAGGGCTACGGACCTATAGACTAGCTGCTGATGACCATCTCAGCCAGGAGAGCTGGATCGCTGCTCTATTCTGCGCCAGTCACATCTACCTCTCCATGATAGTCAGAGACCTGGAGAGACGATACGAAGaagccaaaagaGACAAAGGCCTTTGTGTTTCCATCCAGACCTCTGAAGTGACTTCAGCACCCAACACGATAATGGCTTCTTGGTACACCGGACAACCGTATTTTATACAAGGGACTTCCATAGTGCCCAGAGATGGGCGGAGCTACAGCACCAGTTCAATAGCACCTACATATGTGCCGAACAGGCCCAGCAACTTCAGTCTTCATGCCCCTCCAGCTCAGTTCAAAGCTACTAACAAAAGATCTCCAAAACTCTGGCCAAAGAGAAATGCTCACGTCACCCCTTTAAATGGTCCGGCACCATCTCATAGTGAGTGGCCAATGATGGGCTTCGATCCTTTGGAGGAATTCAGCAAATTGCATGAACACTATGGAAATGAGGTTAGGCAGCTAAGAGCTGATTGGCTGAAGAAGAAGCGCAAGGAAACTGGATACATAGAGGAGGACCTCATTGATCTTGGCTAGAGTGATCTCTGAGTTGAGATTGTTGTCTAAATAGTCGTTCCTgtgaacagatgaatgaatgtattaagaATGTGACCATATAATAGCATAATGTTCAGACATTGGCACTGGTTTCTAATTTTGGTGGCgtttctgataaatgttttctcATTTCCTCTCTGTGGGTAGGCTACTGCACATCTCGGCCTAGTTCCTTCCTGCCtgaattgtcaaaaaaaaaaacacccaaccACTGGTAGTTTTACACCCATATATGTGCAGACCTTTACTATGCAAAAGTCATTAATCATCATTACTCACCGCTTGCTGGTCAGGGTACATACTTGATTCAAGTTGTAATAATTATTACTGTTCtctttatgattaataataattattcattaatataatttatattaataattatattattattaactattattaatttattggtaAATCATCTCAGTATATACTGAACTAAAGCAATTGTGTAATTAAATAGGTTAAGATTTGtgcttaaaaggacagttcacccaaaaggtCAAACTCTGtggtcatttactcactcttaactTGAGCTTCGTTCttgtatttaacagaaaacaAGCTATTTTGACGAATGTTGAAAACTAGTAGCCATTGATTCCAGCAGTATCATTTCTACTATGTATACTGTGGCTTCAGGTTTCAAACATtcattaacccttgtgtattgttcaaattgactaccttttcattatgttagtggctgtttttgccccattgacttttattataacaacattttcaACAACATCAAAGCCTTGACACCATATGGTTATGCATCTTGATTGTTGATGGTTTTTCCTGTTGTGAAGaggaaaaatgtttattttataccgTTGATCCACTATTTACTTTTTTGATAGGCTTGTGCAAAAACGttttggcttttatatggagttttatggagtataacagcagtttatagtgtgtgtgaataaatacacttactagttttactatgttctgagagccgaggtgtttatttattttctttagaaATATCAAGGTAAGTGTACAAAGGTCTCtcttgcgcgcacacacatacacactcaaaataattttttgcactgtaactgatcatcaacagtaaaaattacggtcccactttatattaagtggccttaacaaatatgtacttacacaggaattaatagtttgttacaaagtacttattgtgtaaatacatgtatttattgtgtacttatgcttgattaaatacctatatgtaattacatctgtaattaacttaagaacccttaaacctacccataccaccaaacctgtccataacccaacccctattccaactcaagagcaccacaagtgttctcaaatgcattatgaacacagtaagtacattgtatttattttttgatgcaagtacatagtagttaaggacacttaatataaagtgggaccaaaattaCAAATGTTATCTCTTTCCaaaagggaaaaccaccaacaatcaagaatgcatgatttggtgtcatggctttgcaatcaaaaaatgttgtcataatggaagtcagtggggcaaaaacagctactaacaaaaaaaaagggtagtacatttgaacaATACTCGAAGGTTAACAAATGTTTGAAACCTGTGTAATAATCCAAAGCATTTCCCATAATATGCATagaaataagatttgtcaccaaaaatcattccatttgctcaAACACAGAGATTTGTTGCCAAATAaacctcaaaatcaccccagagtgctGAAAACATTCCCAACACACACAAGGgtaaaatatcactttaagaTACTTTTGGGCAGGGCTTCAGTAAAATGTTTGGGTATGTTATGTGTCACACTAATGTGATTTTGTAAAGAGCAAGTGAGTAATTCAGATCTGCCTTACGAAACTTTCTTAGCACAGTTCAGGCGGTTTCACAAACAAACTGAAACGCACACCCTGTCTGCTCTTCCTCTTTCACAGCACCTCAGTTCTTTGGGTGTTTAGACGTGCCTTTTTCTTGTAGTTTCTAAATCACTTTACAGTTTTGGAATTCTAAACACAGTTAAAAGCAATAGTATTTATTGGTGTGACAGTCTTATCAGTAAACTGAACTATTGTTTGTAGATGCAGCTCCTTATGGGCTCACTAGAGGGCACCGCACCTGACCAACAGTGCTACTATATGCAGCCATGATTCAGGCACCCAGGGCACTAGTGACTTCACAACTGATATTGTATCCAGGGTTTGTatgggtgctggaaatccttgaaaatgcttgaattttATTGTGGTGTTTTAAAGCTTGAAAAGTGCTTCGTTTTTTGCATAAATtgcttgaaaatgtaaaaatgttgcttttataatCACTTGTTAAATAGGACATAATTTACTAttcaaattacaaatattttgcgTTTGCATAAAATGAAAAGTCTTCGCATGTGCTGATGGTGGTGATGTTGATCTGTGCCCTTTGATTAAGCAGTGATTGAAGACTGCATGGAGATTACAATTTCACAAGTGAACAACGCATAACTTTAAAAGGATGACATTTAGGATGAGAGTAAATGACAGTAATTCAGTGTTGCGCTTCGGGCAATCATGCCAACAAAATGCACaaaaagtgcttaaatttgactttggaaaAGGTTTAAGAATCTGTTTATCATATAAAGCCCTGAACAATCAGATCATTTATTGAATGTTTTCTCAGTTTCTGTATCTAGCATGCTCAACGTGTTATCTTacagcatacactgtaaaacccaacagttaactttatcaaatgaaatgagtgttaaCTCAAaacttactgaaagttaattctactcatttgaaaagagttttgaactcagtgttgaaggtaattagttaattaaaaaccTCATTATGTCAACTTAAATGAAGAAAGTTCACAGTACTCctgtagattagttttttaactcaaatggtttgtagcaatcagtttcctcaaacggtttgagttgccttaacttattgggttttacagtactcagttgatttgagttctcttcatttattgggttttactgtactcTAATtacttcgtttactcaaatgaattAGGTTCGCAGTACTCATTTGGAGTACTCTGTTTCATAATGAATTTAATTTGATGCATTTTATTGATAATCATTTGGTATTTCGATATTGCAATGCAACAAGGACATTTTAATCAGTGTTGGTACATTTTTGTGTGTGCTTTACTCAACTTGTAGCAATCAAATTATAATACAAGTACAATAAATTGTTCTGTAcatatatttatgtttgtatgtgATCTAATGAAGTTCAAACAACATTAGAATTGGTAAGAAAAATGCTTTAGATGACTTTAAATATGGcttgtttgttggtgccagatgggctgggctgagtatttcagaaactgctgatctactgggaattCCACACACAGACACCTGTAGGTTTTACAGAGACAAACAGAACGTATCCAAGGCAGATTCGTGGTCAGAATTGCCTTGCTGATTCCAAAGCTCAGAGCTGATAGAATGGAAATAATAGCACTTATTGCTACTGAGGTCTACAGAATCTCTTAATGCAAACATTGAAGCAACAGCAGAACAACACACTGGTGGAGTCTCATGACAGCTGAGACCAAGAAAATTAGATCAAAAAGGTTGTGTATTCTAAACTATCTTGTTTTGTGCTACAACACTCGAATGGTATTGGGGACAGACTATAACTCATAAaccacagctctgcagatttaGTTGTATGATTAGAGCTTGACAACAGATCTATGACCTTTAATGTTAGATGCAACAAAGTTCCTCATTTTAACCATCTCTACACTAGTGGATGCGAGGTGTCAAACCCCTAGTGATGGTGGTGTGGCCTTTTTCACCTCATCCGGATTCCAGTCATCTCTACCGTGATAAACAGCATTGGCAAAATATGTAAGACTAGATCACATTTCATGCAGCTTTCTATATGTACAGACATTTACTCTTTGAGAGTCCAGAAGCAAAGATGATTGACACAGTGGCCTACAAGTTTACCAATGAAGATATCATACACGATTTGAGCAATCATGAGCTGAGCATGAAATATTTTTCAGATAGCACTTGAAATACCTCGAATGAAGGTCCAAACGTCTATTTACCCCctccctttctctttctctcgTGGACTCTTTGACTGCTGTTCCACCATATATAGTTAGAAGCAGTGTGTTAATATAGCATAGGCTATACCATCTCCTCTAAATTAAGAAAATGCGCAGTCACTAAGCTGCTTCTTTTTCTTTGAGAATTAGCAATCTTCTTGAAAACAATGTATTCC

Function

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0007032 endosome organization biological_process
GO:0001881 receptor recycling biological_process
GO:0005769 early endosome cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0055037 recycling endosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-273 Predicted to be involved in endosome organization; receptor recycling; and retrograde transport, endosome to Golgi. Predicted to be active in early endosome; recycling endosome; and trans-Golgi network.

Ensembl:

ensembl_id ENSDART00000184932

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051608 lncRNA downstream 218014 32598644 ~ 32603191 (-) True XLOC_026483
TCONS_00051605 lncRNA downstream 249153 32565194 ~ 32572052 (-) False XLOC_026481
TCONS_00053062 lncRNA downstream 249346 32565194 ~ 32571859 (-) False XLOC_026481
TCONS_00052475 lncRNA downstream 249577 32570759 ~ 32571628 (-) True XLOC_026481
TCONS_00051602 lncRNA downstream 360232 32459183 ~ 32460973 (-) True XLOC_026479
TCONS_00053063 lncRNA upstream 23732 32855161 ~ 32859347 (-) True XLOC_026488
TCONS_00051626 lncRNA upstream 93110 32924539 ~ 32925497 (-) False XLOC_026492
TCONS_00051645 lncRNA upstream 252559 33083988 ~ 33113683 (-) False XLOC_026498
TCONS_00051646 lncRNA upstream 252559 33083988 ~ 33259621 (-) True XLOC_026498
TCONS_00053064 lncRNA upstream 468765 33300194 ~ 33301311 (-) False XLOC_026499
TCONS_00051612 mRNA downstream 2598 32813048 ~ 32818607 (-) True XLOC_026486
TCONS_00051611 mRNA downstream 3931 32813048 ~ 32817274 (-) False XLOC_026486
TCONS_00051609 mRNA downstream 183527 32603256 ~ 32637678 (-) True XLOC_026484
TCONS_00051610 mRNA downstream 209372 32607780 ~ 32611833 (-) True XLOC_026485
TCONS_00051606 mRNA downstream 224811 32587010 ~ 32596394 (-) False XLOC_026482
TCONS_00051615 mRNA upstream 23728 32855157 ~ 32859335 (-) False XLOC_026488
TCONS_00051616 mRNA upstream 38756 32870185 ~ 32873641 (-) True XLOC_026489
TCONS_00051617 mRNA upstream 58367 32889796 ~ 32902265 (-) False XLOC_026490
TCONS_00051618 mRNA upstream 58700 32890129 ~ 32898626 (-) False XLOC_026490
TCONS_00051619 mRNA upstream 62289 32893718 ~ 32902138 (-) False XLOC_026490
TCONS_00051585 other downstream 633820 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 2020547 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 2333111 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2951081 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2952473 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051635 other upstream 141545 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 592763 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1117240 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1191736 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1203763 34035192 ~ 34035631 (-) True XLOC_026534

Expression Profile

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