RNA id: TCONS_00051619


Basic Information

Item Value
RNA id TCONS_00051619
length 883
RNA type mRNA
GC content 0.52
exon number 7
gene id XLOC_026490
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32889796 ~ 32902270 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACGCGCGCAGTCATGACCCACGGCTGTCAGTGATAACACGATGTTTCCTTATGCCTAATTAATGTTTCCTACTCTTCCAAGGGGATGCGGCACTTACGTGGCTTTCGGGAGGTTTACTCTACCTAACTGCGTTAAGAAGTCAAGCAGAAATTAAACCTTGTACATCGGGAGCCGTGGAGAAGCGCTATGCCGAGGCGGAAGAGAAATGCTGgcagcagttctgaaggcacagAAGACTCGGACTTCTCGGCTGAACACACAGACAGCTCAGAGAGTGAAGCACACGTGGTTCGAAACACTCGCCTCACTCGCTCCTCGTTGAGACTCAGCCGCAGCTCGCAAGGACATTTGACAGGGAAGCATGAAAGACACTTTTCAATATCTGGATGTCCACTGTATCATAACCTTTCTGCAGATGAGTGTAAGGTGAAGGTGAGCTCTCGAGACAAACACGTGGAGGAGAGGACACTCTCACAGCGGCAGGACGAAAACCGCCATTCAGCTCGACAGCAGGCCCAAACCGAGCGACAGCTGCGATACAAGGAGAAGGTGACAGAGATGAGGAGGAAGAGAAACTCTGTTCCTCCAAAAGAGCAAAAAGACAAGTTCACAGAGCACAGACAGACCCACAGCAGCAGCCGTGAGCCTCTACTGGAGAACATCACTAGTGATTATGACCTAGAGCTCTTTAGAAAAGCCCAGGCACGTGCCTCGGATGATCTTGAAAAACTGCGGCTTCAGGGACAGGTCACAGAGGGAGGCAACATGATAAAGACCATTGTGTTCGGCCGCTATGAGTTGGACACGTGGTACCATTCGCCATACCCAGAAGAGTACGCTCGCCTCGGCCGCCTCTACATGTGCGAGTTCTGCCTCAAATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016573 histone acetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-168 Predicted to enable histone acetyltransferase activity; histone binding activity; and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone acetylation and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human KAT7 (lysine acetyltransferase 7).

Ensembl:

ensembl_id ENSDART00000144026

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053063 lncRNA downstream 34371 32855161 ~ 32859347 (-) True XLOC_026488
TCONS_00051608 lncRNA downstream 290527 32598644 ~ 32603191 (-) True XLOC_026483
TCONS_00051605 lncRNA downstream 321666 32565194 ~ 32572052 (-) False XLOC_026481
TCONS_00053062 lncRNA downstream 321859 32565194 ~ 32571859 (-) False XLOC_026481
TCONS_00051626 lncRNA upstream 22401 32924539 ~ 32925497 (-) False XLOC_026492
TCONS_00051645 lncRNA upstream 181850 33083988 ~ 33113683 (-) False XLOC_026498
TCONS_00051646 lncRNA upstream 181850 33083988 ~ 33259621 (-) True XLOC_026498
TCONS_00053064 lncRNA upstream 398056 33300194 ~ 33301311 (-) False XLOC_026499
TCONS_00051647 lncRNA upstream 398280 33300418 ~ 33304123 (-) True XLOC_026499
TCONS_00051616 mRNA downstream 20077 32870185 ~ 32873641 (-) True XLOC_026489
TCONS_00051615 mRNA downstream 34383 32855157 ~ 32859335 (-) False XLOC_026488
TCONS_00051614 mRNA downstream 61747 32825309 ~ 32831971 (-) True XLOC_026487
TCONS_00051613 mRNA downstream 62289 32821205 ~ 32831429 (-) False XLOC_026487
TCONS_00051612 mRNA downstream 75111 32813048 ~ 32818607 (-) True XLOC_026486
TCONS_00051623 mRNA upstream 3944 32906082 ~ 32912787 (-) True XLOC_026491
TCONS_00051624 mRNA upstream 22047 32924185 ~ 32927516 (-) False XLOC_026492
TCONS_00051625 mRNA upstream 22048 32924186 ~ 32934359 (-) False XLOC_026492
TCONS_00051627 mRNA upstream 22473 32924611 ~ 32925476 (-) True XLOC_026492
TCONS_00051628 mRNA upstream 50937 32953075 ~ 32956808 (-) False XLOC_026493
TCONS_00051585 other downstream 706333 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 2093060 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 2405624 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 3023594 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 3024986 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051635 other upstream 70836 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 522054 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1046531 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1121027 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1133054 34035192 ~ 34035631 (-) True XLOC_026534

Expression Profile

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