RNA id: TCONS_00051616


Basic Information

Item Value
RNA id TCONS_00051616
length 1813
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_026489
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32870185 ~ 32873641 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAACACGGGCGCTGGAAACGTCATTGTTTCTACTAGTCAGTCTTTTTGAACTAAAAACAACAGCATGAACAGTTTTAAGATAGAAATGTTATGAAAGACCTCTCTCGGATGTTAGTTCACGGTTTGAAGCCTCTGTTATAGTCTGTCATCGCTCTTGAGGACTGAGAGTTGCAGATGGATCTCCTGGTCACCAATGTGGCCGAGCTCCTCACGGCTGCTGTCCAGGAGGTGCTTCAGCTCATGGGTCAGGCTGTGTTAGAGTATCAGAAGGAGTTTGCCAAAACACGCCTGGAGAATCACCAACTCCAGCTGAAGCTCCGAGAACTCCAGGAGAGAAACACTAAAGCACCAGATGAAGCTTTTCCAAGAGATGAGTCTCATTTGAAAGAGGATCAAGCACAGGAAGATCTTATTTCTCATGAAGATTCAGCTGTGAGCGAGGAGATAAAGCTGACTGATGAACCTGCTCATATAAGCCTAGTTTTAGATGAGACTCCTGTAAATAGTCAACATCATTCTCTGCAAGCGACCTGTGAATATTCCTTCAATAATCAAAGACCCCTATCCAGAATTAAGACCAGCTCTTCAAGTAGGATCTCCAACTCTTCATCTGGCAGCAGAAAGACTCCAGCGACGGAGACACCGCAGGCCTCAAACACAATCAAGCTGGAGTCTAAACCAGAGCCTCTGGAATGTCCTCTTACAGGAGATGCAGATCATGTGCCAACACCAGCTCCTGTTGTTGTTCCTGTGCAGGGCGCTGCTTTTGCAGAGGAACACATCCAGCAGCCGGCATCCTCAATTCCTAACAACATCATCCACTTCAGCCAGCCTCATAAACCAGTGAGGTGTGCTTCTAAACACGTTCTGAGGTCGCGGGTGAAGAAAATGGTGGAGGCTCAGGGTGGTCGTAGTGCCGTCAGCATCAGCACGAGCAGAGAGATGCTGCACAGCTGTCATTTGTGCGGGAAGACCTTTGCGTCACCCTCCAGCCTCGGTGCCCACTTTGTGTGCCATTCAAACGAGAGGCCTTTTGGCTGCAAATACTGTAAGTTCAGGTTCAGTCGTCTGGCCGATCTGAAGAAGCATGAGcaaattcacactggagaaaagccataTCACTGCTCCCTCTGTGGACGCCGCTTCAACCGCAGAGAGAATCTCAAAAGACACCTGAGGAAAGTTCATTATGGAGCAGCGCTGTGAGCTTTAGACTTCACAGGCTTCATCCTTTTCACTTTGCATGCTGATGTTGCATCTGAATGGCATTAATCAGTCTGACGAAAGTTTTCCTCACGTTAATATCATGCATTGCTGACTGTTTGCGTTGAACAAAGGTGAATTATGATCTGAAATATGACACACTGATGAGTTCAACTGGATTTTTGACATTGTTAGCATTTATAGCAGCATTCTTTTACTTGGTTTTTTACCAAATGTTTTCTCTAGAAGTGCAAAAGTTATGCCAAACAAACATCATtgctcaaaagtttggggtcagcttTAATGAGGGTTTCTGCAGCTTTTATCAAGTCAAATTTGAAATTTTTAAAGACccttttaaaaccattataaatgaaactttagaCTTGTACAGGActaaacactaatgattatttctAATGACCCGGTTAGGagtggatattttttttttttcaaaattaaatcaaatgtaattatttcCTAGCAACATAtcttaatgtgtcaaaacaagacaATTATAGTtgcatacactttttttttttattgacaagtttaacattgtgtatttattttggagatagttgcataaataaaaatatttatttgtcg

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-532 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDART00000075277

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053063 lncRNA downstream 10838 32855161 ~ 32859347 (-) True XLOC_026488
TCONS_00051608 lncRNA downstream 266994 32598644 ~ 32603191 (-) True XLOC_026483
TCONS_00051605 lncRNA downstream 298133 32565194 ~ 32572052 (-) False XLOC_026481
TCONS_00053062 lncRNA downstream 298326 32565194 ~ 32571859 (-) False XLOC_026481
TCONS_00052475 lncRNA downstream 298557 32570759 ~ 32571628 (-) True XLOC_026481
TCONS_00051626 lncRNA upstream 50898 32924539 ~ 32925497 (-) False XLOC_026492
TCONS_00051645 lncRNA upstream 210347 33083988 ~ 33113683 (-) False XLOC_026498
TCONS_00051646 lncRNA upstream 210347 33083988 ~ 33259621 (-) True XLOC_026498
TCONS_00053064 lncRNA upstream 426553 33300194 ~ 33301311 (-) False XLOC_026499
TCONS_00051647 lncRNA upstream 426777 33300418 ~ 33304123 (-) True XLOC_026499
TCONS_00051615 mRNA downstream 10850 32855157 ~ 32859335 (-) False XLOC_026488
TCONS_00051614 mRNA downstream 38214 32825309 ~ 32831971 (-) True XLOC_026487
TCONS_00051613 mRNA downstream 38756 32821205 ~ 32831429 (-) False XLOC_026487
TCONS_00051612 mRNA downstream 51578 32813048 ~ 32818607 (-) True XLOC_026486
TCONS_00051611 mRNA downstream 52911 32813048 ~ 32817274 (-) False XLOC_026486
TCONS_00051617 mRNA upstream 16155 32889796 ~ 32902265 (-) False XLOC_026490
TCONS_00051618 mRNA upstream 16488 32890129 ~ 32898626 (-) False XLOC_026490
TCONS_00051619 mRNA upstream 20077 32893718 ~ 32902138 (-) False XLOC_026490
TCONS_00051620 mRNA upstream 24952 32898593 ~ 32902182 (-) False XLOC_026490
TCONS_00051621 mRNA upstream 25068 32898709 ~ 32902270 (-) False XLOC_026490
TCONS_00051585 other downstream 682800 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 2069527 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 2382091 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 3000061 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 3001453 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051635 other upstream 99333 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 550551 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1075028 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1149524 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1161551 34035192 ~ 34035631 (-) True XLOC_026534

Expression Profile

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