RNA id: TCONS_00051780


Basic Information

Item Value
RNA id TCONS_00051780
length 3359
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_026581
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34652144 ~ 34656745 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttgaagaccgacgggttaacatcactgctgaggaactgcactattcattgtcttcaataaagtcttctctccgtaagaactttggtcagcttacttattttatgtgttagagtaatctaatacattggcgagccccccaagaacggttaagccaaatacagcaaaatctaacaatTTGGCGAAGCCAGCCAGGAGAGACTGAAAAGAGGAAAACTCATCAACTGCAACAAGAAATGAATTGAAGAATCTTGGAGAATCTACAGTTAAAGCTGAAGATAAACGGATTTTGTTTGTGGACGAGTCCTGGATCTACATATTGTATCTGTGGACACCCTTTATTTTAATCAACTGGATCTCATCTCAAAGATCCTAGTTTGAGCACTGTCCTGTACTTCCCATGGCTGAGTCTTCAAGAAACTATGCTAATGGAGCTACCCTGAGAACAACATCAGAAAAACATGGAACAGAACCTCCATGTGTTACCATTGACCAGATGTTGGAGAATTTGAATGCATATTTAGACAAAAGGCTGGGACTGAGGAAGTGTCGTGATGATGTATGCAAGAAGTACAGCATCAAGCACTCAGGGAGTGGATTATGGGCATTGCCGGACATTAAAAGGGCTTATGGAAAGACACAGCGCTTATGCACAACCACCAAGAAGGATGGATTGTCTGTGATTTTGGTTAAGCAAATTCTTCAACATGAGCATAAGTGTGAGACTGACAGATTGGAACGTGAGAACAAAGCGGAGAAAGCTAAAGTTCGAGCACTGGCTGAACAATTGCAAAACTTAAAGGCGCATAAAGAAAGACTGGAAAAGGAAAACAACAAGCTATTGACTTTGATCTCCAAACAGCTGGAATCAAAATCTTCAAGCAGCTTTGTTGACAGTGAGGCTGATCTTTCCATCAACACCTGTGTTCATGACCCAGTGAACTCAAAGATTAGATTAGCTCCTGTGATTGTCAAACACAGAAGGACTAACGTTGAAATTGACAATGAGGAGGGCTATGAAGACAGTGGAGAGAGACGAACTCGCACTGTGACAAAAGTGGTAAAGAAGTATGTTCCATACAGGACATACCATCCAGCTACTCCAGAGCAAGTTGACAAATGGTCAAAAGAGCTGCCAGATGTATACAAACAACCACGAAAGGTTTGGCAGTTTCTTCAACGACTGCAGAAAATCTACATTTTACATCCACTAGATGGTGTGATGATTCTTAATGTCACCCTAAGAGACAGTGACCAAAAGAGACTCACAGAAAGTGTTGAAAGAAGGATTGGTGAATCACAAGAAAACATAGAGGATGGATGGGAAGCCATAAAAAACTTCTTGTTTGAACTGAAACCTGCAGAGGTCAATTGGGCAAGAATTACCTCATGCATGCAGAAAACTGGAGAAAGTGTTGCAGAGTTTGAAGAACGCTTCAGACATATATGGACGGAACATTCTGGTCTGAATACAAGTGAAGATCTTGACAAAGACACTGGAATTCCCCTGAAAACAGCATTTGTCAATGGACTCAATCCTGAGATTTCTAAAGATCTTAAAATCAGGTATGATGACTGGGACAGCACTGTAACAACTTTCATCCAGATTGTTGAATGGTCAGCTAAACTGGAGAGAGCACAAGATGTCAGACTCAGATCTTTGCAATCGAAAAGTTTGTTTTACAAGAACAGAACAATTGAGGATGAGCAAAAAGAACGTGAGTATATGGGATACTCAAAACTACGAACTAAAGGAAGATGCAGAAATTGCAATGAAGAAGGACACTGGGCCCGTGAGTGCAAGCTCAGTTTAAAACATCAAAGCCAAGATGATGACCACCTGTTCAAGCAGTTTCAGCAGCtaacaatacaacaaaaataGACTCTGCTAAATGCTGTACAGCCGCAGGGAAACTGAAGAACCTCTCTCTGCAGCACCAGCTAGTGACGTCTTTTCCAGAAGCTGATGAACTGAATGTGTATGCAAACAATAAGGTAAAAGCTGACACAGAAGTCTCAACAGATGAAGACAAGTTTGATGTCCTAGTAGATGGTGTTGCCAAACAAGCCGTAAAGGAGAGAGGTGAACATACAGCGGCATTAAGACAGCTTCAGAAAGACCACGGATCTTTAGTCTTAGACAGAATGCAGACTGCAAATGAAAAGTCTCCAAAAGAAATGCTGATGGACGATGCACAAGAACTGCGTGATGGCAATCAATGCAGTATGGATGGAAACAGACTATGCCCTTTTGAACATCCCCCAAGCCAGCCCATGTCCACAGAAAACCTGACATCTGACAGCCTTGTCCAAAACAAAGCAAGACTCAGCCTGGCAGTACATGAGGACAATAATCAAGTTTTGTCACCTCTGAAGAGGGGCCATAGTTTAGAGCCCAGTAAATGGGTAAAGACACGACAACCTCAGAAACTACCACTAAAATCCAAGTGGAAGAGCTCACTTGAGAAAGTTTTAGTATCTGATTCAATAATTAATGTTCAGGGACTTGATGAATGGATCAACGTGAGTTTGCCTAGAGACGAGGGATAGATGACAGTAGTGTTTTTCAGAGTCCAGATATGGCGGGACTAGAGTTTTTAGGCTCTAGCTTGTCGCCTGAGGATGAAGACATTAACCACCACTGATAAACACTGTAGTGTCCTGTCAATATTAAATAGGGACAGTTTCTATACTTTCTATAGGCAGTTTGAAAATTTCTCTGAAATCTTTTTCTGGGCAAGATACGTTTCCCTTTTCCCTTTTGTGTGATTGCAGGTGTTCCAGAGGATGACCAGAGACACACAACACCAGACACCTAGATGAACACACCTGAACATCCACAGAACACAACCACATCCTGCTACTTCTACAACATCACAACTTTAAATAGAAATGGACTCAGGCATTTGAGGAAATGCAAGCTTCACCATGACTTCTTATTCTGTCACTTTAAGTTATATAGCCTGTATTGCAGATTTCTGTATACATGATTAACTTGTTTTATGATCAAATATGATCAGAGGAGGGATTGAAagattatgtgcattttagttcagttgcatttacattgattaaactCTGATGTGATATGATGGGGTGACCTGTGCCTCGACCCCCACAAACTGATAGGTGTGAACTAAATGACCCTTTTACAATCTCAATGGGTATTagcaaaacaacagctgaaacatctgaagagggtcctgctgagcctcgtaaacagaatggtttgtttgatgctaatataaagtactgtctcacagacagtactttgagttaagttacttgaagaccgacgggttaacatcactgctgaggaactgcactattcattgtcttcaataaagtcttctctccgtaa

Function

GO:

id name namespace
GO:0030902 hindbrain development biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030828-6 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Acts upstream of or within hindbrain development. Is expressed in several structures, including margin; mesoderm; neural tube; neuroectoderm; and notochord.

Ensembl:

ensembl_id ENSDART00000144824

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052476 lncRNA downstream 10171 34641048 ~ 34641973 (-) True XLOC_026580
TCONS_00051776 lncRNA downstream 59088 34591917 ~ 34593056 (-) True XLOC_026576
TCONS_00051773 lncRNA downstream 105738 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051771 lncRNA downstream 174781 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051763 lncRNA downstream 471693 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051786 lncRNA upstream 44469 34701214 ~ 34706737 (-) False XLOC_026582
TCONS_00051790 lncRNA upstream 110796 34767541 ~ 34778787 (-) True XLOC_026583
TCONS_00053067 lncRNA upstream 145254 34801999 ~ 34804718 (-) False XLOC_026584
TCONS_00051793 lncRNA upstream 145254 34801999 ~ 34806079 (-) False XLOC_026584
TCONS_00053068 lncRNA upstream 290657 34947402 ~ 34948061 (-) False XLOC_026585
TCONS_00051779 mRNA downstream 27399 34623560 ~ 34624745 (-) True XLOC_026579
TCONS_00051778 mRNA downstream 39043 34601852 ~ 34613101 (-) True XLOC_026578
TCONS_00051777 mRNA downstream 52482 34597741 ~ 34599662 (-) True XLOC_026577
TCONS_00051775 mRNA downstream 58505 34587988 ~ 34593639 (-) False XLOC_026576
TCONS_00051774 mRNA downstream 65741 34525991 ~ 34586403 (-) True XLOC_026575
TCONS_00051783 mRNA upstream 31277 34688022 ~ 34717882 (-) False XLOC_026582
TCONS_00051784 mRNA upstream 40533 34697278 ~ 34753605 (-) False XLOC_026582
TCONS_00051785 mRNA upstream 41076 34697821 ~ 34724879 (-) False XLOC_026582
TCONS_00051788 mRNA upstream 110244 34766989 ~ 34801041 (-) False XLOC_026583
TCONS_00051791 mRNA upstream 144401 34801146 ~ 34816979 (-) False XLOC_026584
TCONS_00051772 other downstream 105745 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051752 other downstream 548779 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051740 other downstream 565661 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051725 other downstream 587208 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051722 other downstream 593427 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051787 other upstream 86834 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051789 other upstream 110796 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051794 other upstream 149094 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051795 other upstream 290893 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051816 other upstream 1577462 36234207 ~ 36239041 (-) False XLOC_026597

Expression Profile

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