RNA id: TCONS_00051775


Basic Information

Item Value
RNA id TCONS_00051775
length 2844
RNA type mRNA
GC content 0.36
exon number 4
gene id XLOC_026576
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34587988 ~ 34593639 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taattctAAATGGGTCTTATTTTCCAGTGtctatgtaaagctacccaatcaggccAACACCTGTATACAGTATAAAGACACTAACTAAACGTCTCAGTAAAACTTATATTTACAGCTCTGTTTAACGCTATGGTTCCTCACAATAACATCTgtaagttctccatgtatttgcAGACCATATgtggtgaggacactgacctggacagactgttgtactattagtttattatagtttttaaagcttGTCAAAGAAAAGTATGTATGGTTTGCTTGttctgacacattatttaagtaCTATTTAGTTATTACTTTTTTTGGAAAGTAAAAATCCTCAAGGTTAAGCCCATTATAAGTCTTAAAATTCATtcataaaaaggtcttaaaattgacttgctgaaacctgcagaaaccctaaaAAATACTGCAGTTTTCCATAAAAAGAATAATCCATGTTGATTTAATTGAGCTTTAAATATATTACGGCGTTTATTTAATGATAATGATGCAATTACTTGTCCATTGTAGTTCTTCTGAAATCACTAAATGAATCAAGaagatatttttttcacatttaaaagcagaactcttgaaaatgtttttgctttCAGATGCCTGAGGGTTGCTGACTAAGATGTGGAAGTTGTGGGctggagcgtgtgtgtgtgtgtgcgcatgagagagagagagagtatataAATTTGCAGTGCAGACTTAAGATTTGGTTTGCTTCTTGTGTTTAGTTGGAGATGCTCTGATGACAATGAGAATGAAGACTCTGCTGTTTACCTTCCTGTTGTTGGGTGTTCTTTGTCTCAGCAGCTTTGCAGAAAGTGCAGATGTGATCAAATTTAAAGGTGAAAGTGCCACCATGAAGTGTCATATCTCTGATAAAGATGCGATGGGAGTGTCTCTGTTCACCCGACATAAGGATAAGCAGGAAGTCTTATACTACTTTATACAAtcaaacaaattaactattaagcCTACTCATGAAGGACGTGTTGAAGCCAAATTTGATGGCAAGACTCTGACTGTAGACATCTTGAACCTGCAAAAAGAAGATACCGGTGCCTACTGGTGCGAGTGCAATCATATAGTGACTCGTGAGTGTAAAATGGATCAGTCTGGTGTTGTTCTTGTGGTTCATGACCGAGAGAGACAGCAAAATACGGGGCAAGTTTCTGCTTCCACTGCTCCTTCAAAGTTTGGAGGCATGAACGGCTTACTGGTTCCAGTGGTGGCTCTGACCGCCAGCAGTGTGCTTTTACTCTTGCTTCTGGTGCTGGGAGTGTGGGTCGTGCCCAAGATTAAGAAGATGAGACAAACCGCTGAACAGGAAAAAACGTCTGCAAATGAAGTGTACGAGGTCATGACTGTGAAGAGGGAGTACAGATGAGAAATCAACAGATTTCAGGTTCTGGGCtgatttttgtgtttgtgtgtgatatcATCAAATGTTGTTACATGACAGCAAGTCACTGGATTGTACCTTCTCAGGGGTTAAATTATTGTCATTATCAATATAATAGTCTGAAAGAATGCAAACCTTTTGTTATTTCGCCATTTTATGCCGTCAGGGcatttttactttcatttgaaAGAATGCCATCAGTATTTGAcagaagaaatatatatatatatatataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgaaatatataagtaaataaaaaaatagagaaaTATATATGCATGagtataaataacatttacttttgTACTGTTAGTAAGTACTGTCTGATTTGAGTTGTTTAATCTATCtctgttcattcatttacttttcggcttagtccttttattaatctgggcttgccacagcggaatgaactgccaacttatccagcatatgtttacgcagcagatactctTCTTGCtgtaacccataactgggaaacacccgttcACTCTcattttctctcacacacactacagataatttagcttattcaattcacctatagcgcatgtctttgaaaccggagcacccggagtaaacccatccaaacatgggaagaacatgcaaacttcacacagaaatgccaactgacccagccgaggcttgaaccagtgaccttcagcgctacccactgcaccattgcGTAAACCCCTCTGTTGATATTTCATTTTACAAATTTAGAGAAATCCCTTCTATCCTCTTCTGTCTATTGTAAATAtcacagagtgcattaagatatATTAACATATgagtttttattctgtttttatgaGGTGTAAGTTGTTTGAAAACCTGAATGTATAGTTTCACCAGTGTACATTGCACTGCTAATTTACAGGAACAAAAATAACAAGACAATAGAAAAACAGGATGTGTAAATGTCCCTTAGTTTCAGTCTGTGCTTTTTCTGTGACTTGCGGTCTATAGTCTGCTTTGGCTGTCCTTTTGCACATTCTGCTTCTCAGAGATGAATATGCAGACGTCTTCCTGTGGCATAGTATAGTCAAGACCACTTATGAGCAAGACTGCATCTCCTGAAGAGAAGCTCACCAATTTTCATTTAACTTTAGCCCACCAAAACATAAAGATCGAAACTTCAAGTGTTATAACTACATTGGGGAGTTACCAGAAGTCAGAAGACACATGAGAGAAAATATCAGCTTAAGAGTCTTTGCCAAATCAGTTTCTCTTTGTATATATGTTATTTCTTTACATAAAGGACTTGTTGTCTAGGTTGTACATCAAAATGGCATGTTGTTCCCATCAGAAGAatgtcattaataaaaaaaaatctgtaaataaaaatatttttttaaagtaa

Function

GO:

id name namespace
GO:0002250 adaptive immune response biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080303-7 Predicted to enable signaling receptor activity. Predicted to act upstream of or within adaptive immune response. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000111758

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051773 lncRNA downstream 41582 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051771 lncRNA downstream 110625 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051763 lncRNA downstream 407537 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051762 lncRNA downstream 407556 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00053066 lncRNA downstream 446807 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00052476 lncRNA upstream 47409 34641048 ~ 34641973 (-) True XLOC_026580
TCONS_00052477 lncRNA upstream 59948 34653587 ~ 34655108 (-) True XLOC_026581
TCONS_00051786 lncRNA upstream 107575 34701214 ~ 34706737 (-) False XLOC_026582
TCONS_00051790 lncRNA upstream 173902 34767541 ~ 34778787 (-) True XLOC_026583
TCONS_00053067 lncRNA upstream 208360 34801999 ~ 34804718 (-) False XLOC_026584
TCONS_00051774 mRNA downstream 1585 34525991 ~ 34586403 (-) True XLOC_026575
TCONS_00051770 mRNA downstream 26364 34455322 ~ 34561624 (-) False XLOC_026575
TCONS_00051768 mRNA downstream 40988 34452336 ~ 34547000 (-) False XLOC_026575
TCONS_00051769 mRNA downstream 59682 34455322 ~ 34528306 (-) False XLOC_026575
TCONS_00051764 mRNA downstream 250019 34258755 ~ 34337969 (-) False XLOC_026574
TCONS_00051777 mRNA upstream 4102 34597741 ~ 34599662 (-) True XLOC_026577
TCONS_00051778 mRNA upstream 8213 34601852 ~ 34613101 (-) True XLOC_026578
TCONS_00051779 mRNA upstream 29921 34623560 ~ 34624745 (-) True XLOC_026579
TCONS_00051780 mRNA upstream 58505 34652144 ~ 34656745 (-) False XLOC_026581
TCONS_00051783 mRNA upstream 94383 34688022 ~ 34717882 (-) False XLOC_026582
TCONS_00051772 other downstream 41589 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051752 other downstream 484623 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051740 other downstream 501505 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051725 other downstream 523052 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051722 other downstream 529271 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051781 other upstream 58671 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other upstream 59333 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051787 other upstream 149940 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051789 other upstream 173902 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051794 other upstream 212200 34805839 ~ 34813969 (-) True XLOC_026584

Expression Profile

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