RNA id: TU2267667


Basic Information

Item Value
RNA id TU2267667
length 290
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G1983514
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 41485314 ~ 41485839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGCAGTATTCACAGTGCGCTCCTCTCTCATTCACCGTCAGGACGTAGGAATAGGCAGGACAGGCAAACACGAGGTCTCCGACAGCGAAGTGCTTCACAGCCCGTAGTCCCCTGCCTTTCCCCGGGCTAGCGAACCTCTCCGTCCCCGCTATTCCCTCGTTCTTCATTAAGCCATTCATCTTCAATGCCTCTCACCAATACCAAACGGCAAGGCTAACTAGCCTAGCATCATATGGTTAGCTTGTCACTTCTACGACCAGTCCTTGCCTACGACACATTGAACTACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2267648 lncRNA upstream 32251 41451508 ~ 41453063 (+) True G1983498
TU2267649 lncRNA upstream 32348 41451438 ~ 41452966 (+) False G1983498
TU2267647 lncRNA upstream 32348 41451508 ~ 41452966 (+) False G1983498
TU2267642 lncRNA upstream 43795 41441271 ~ 41441519 (+) True G1983493
TU2267631 lncRNA upstream 59327 41421630 ~ 41425987 (+) False G1983483
TU2267692 lncRNA downstream 27737 41513576 ~ 41520009 (+) True G1983536
TU2267697 lncRNA downstream 39639 41525478 ~ 41525764 (+) True G1983541
TU2267698 lncRNA downstream 39988 41525827 ~ 41526190 (+) True G1983542
TU2267699 lncRNA downstream 41064 41526903 ~ 41527106 (+) True G1983543
TU2267712 lncRNA downstream 71940 41557779 ~ 41558880 (+) True G1983554
XM_036962870.1 mRNA upstream 134565 41297432 ~ 41350749 (+) False LOC110504259
XM_036962871.1 mRNA upstream 134565 41297993 ~ 41350749 (+) False LOC110504259
XM_036963050.1 mRNA upstream 594202 40868101 ~ 40891112 (+) True si:ch211-132f19.7
XM_036962950.1 mRNA upstream 625260 40829046 ~ 40860054 (+) True dnajc27
XM_036963012.1 mRNA upstream 662488 40819696 ~ 40822826 (+) True pomca
XM_036962969.1 mRNA downstream 61532 41547371 ~ 41622795 (+) False LOC110505965
XM_036962970.1 mRNA downstream 61638 41547477 ~ 41622795 (+) True LOC110505965
XM_036962230.1 mRNA downstream 150317 41636156 ~ 41663416 (+) False LOC110505964
XM_036962229.1 mRNA downstream 150320 41636159 ~ 41666062 (+) True LOC110505964
XM_036962636.1 mRNA downstream 191505 41677344 ~ 41737128 (+) False LOC110505960
TU2267650 other upstream 35974 41448402 ~ 41449340 (+) False G1983499
TU2267651 other upstream 35974 41448402 ~ 41449340 (+) False G1983499
TU2267652 other upstream 35974 41448402 ~ 41449340 (+) True G1983499
TU2267527 other upstream 134599 41314147 ~ 41350715 (+) True LOC110504259
TU2267528 other upstream 174860 41297706 ~ 41310454 (+) False LOC110504259
TU2267799 other downstream 254368 41740207 ~ 41741599 (+) False LOC110505959
TU2267800 other downstream 254450 41740289 ~ 41741599 (+) True LOC110505959
TU2267940 other downstream 577186 42063025 ~ 42103896 (+) True G1983721
TU2268011 other downstream 746401 42232240 ~ 42232904 (+) True G1983777
TU2268082 other downstream 776388 42262227 ~ 42262714 (+) True G1983836

Expression Profile