RNA id: TU2267642


Basic Information

Item Value
RNA id TU2267642
length 249
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1983493
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 41441271 ~ 41441519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAACATCAAAGACCATTCTTATCTGTCAGAAAAGATATgccctccttctccctttcccaCAAGGTACAGATAATTAATTTGTTTTACTTACATTTTCAGTAACAGCTTAACCAAGAACCCATACATTTCATACCATAATATAATAGTATTAAAATAACTGGTTCTAATTTAAATGTATGCATAATTAATCATTTCAACTATAATTTCCTCCAACAGGTTACAACCTCAAtttccttgccctgacaggt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2267631 lncRNA upstream 15284 41421630 ~ 41425987 (+) False G1983483
TU2267630 lncRNA upstream 15284 41422702 ~ 41425987 (+) False G1983483
TU2267632 lncRNA upstream 15284 41422702 ~ 41425987 (+) True G1983483
TU2267637 lncRNA upstream 21764 41419217 ~ 41419507 (+) True G1983488
TU2267633 lncRNA upstream 32731 41408294 ~ 41408540 (+) True G1983484
TU2267649 lncRNA downstream 9919 41451438 ~ 41452966 (+) False G1983498
TU2267647 lncRNA downstream 9989 41451508 ~ 41452966 (+) False G1983498
TU2267648 lncRNA downstream 9989 41451508 ~ 41453063 (+) True G1983498
TU2267667 lncRNA downstream 43795 41485314 ~ 41485839 (+) True G1983514
TU2267692 lncRNA downstream 72057 41513576 ~ 41520009 (+) True G1983536
XM_036962870.1 mRNA upstream 90522 41297432 ~ 41350749 (+) False LOC110504259
XM_036962871.1 mRNA upstream 90522 41297993 ~ 41350749 (+) False LOC110504259
XM_036963050.1 mRNA upstream 550159 40868101 ~ 40891112 (+) True si:ch211-132f19.7
XM_036962950.1 mRNA upstream 581217 40829046 ~ 40860054 (+) True dnajc27
XM_036963012.1 mRNA upstream 618445 40819696 ~ 40822826 (+) True pomca
XM_036962969.1 mRNA downstream 105852 41547371 ~ 41622795 (+) False LOC110505965
XM_036962970.1 mRNA downstream 105958 41547477 ~ 41622795 (+) True LOC110505965
XM_036962230.1 mRNA downstream 194637 41636156 ~ 41663416 (+) False LOC110505964
XM_036962229.1 mRNA downstream 194640 41636159 ~ 41666062 (+) True LOC110505964
XM_036962636.1 mRNA downstream 235825 41677344 ~ 41737128 (+) False LOC110505960
TU2267527 other upstream 90556 41314147 ~ 41350715 (+) True LOC110504259
TU2267528 other upstream 130817 41297706 ~ 41310454 (+) False LOC110504259
TU2267517 other upstream 224519 41215475 ~ 41216752 (+) True G1983387
TU2267392 other upstream 393369 41047551 ~ 41047902 (+) True G1983277
TU2266234 other upstream 1051002 40389658 ~ 40390269 (+) True G1982355
TU2267650 other downstream 6883 41448402 ~ 41449340 (+) False G1983499
TU2267651 other downstream 6883 41448402 ~ 41449340 (+) False G1983499
TU2267652 other downstream 6883 41448402 ~ 41449340 (+) True G1983499
TU2267799 other downstream 298688 41740207 ~ 41741599 (+) False LOC110505959
TU2267800 other downstream 298770 41740289 ~ 41741599 (+) True LOC110505959

Expression Profile