RNA id: TCONS_00005258


Basic Information

Item Value
RNA id TCONS_00005258
length 744
RNA type mRNA
GC content 0.55
exon number 3
gene id XLOC_002835
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28470307 ~ 28525611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTGAACGCGCGGAGGGGGAGGAGGGCAGCGAGAGAAAACAAACCGAGAAAATTGTTAGCCTGAAACGAAAGTACCACTACCAAGTGCCATTCGTCCCCCACCGTTATTTGTTTTCGGAGCGATCTCTGCGATTGCGATGTAGTTTTGTCGACTTCACGCTGCGGTGTTGTTGCTCCTTTCCAAGCATCCGGTAAAAATAATATAAGTGTCTGTGGGGCTACTGTACGGACGGCCAGTGCAGAACTGTTCTGATGTGTCAATAAGTTTGAGGCTGGAATGAGAAGGCCCTGGCGTTCCGACCGGATTTCAGGGGGTCAGCAGCAGAATGAAGGGTGGAGGTGGAGGGAAAGAGCCTCCGGGGGAGGGCGAGGTCAGCGGGAAGAGGCCCAAACGCAAGTGTCTGCAGTGGCACCCGCTGCTTGCCAAGAAAGCTCCAGACTTctctgaggaagaggaggaggaagacgaAGAGGAGCTGGAGAAGGAGCCGGTGTTATGTGCGGAGAGCAGTGTTCAGGAGGGAGAGTGTGGCGGGATGGAGGATGACAGTGAAGAATACTCCTCTGAACAGCGGGCTCGGCGGCCCATGAACGCCTTTCTGCTATTCTGCAAACGCCATCGCTCGCTGGTCCGTCAGGAGCATCCACGATTAGACAACCGAGGAGCCACTAAAATCCTGGCCGACTGGTGGGCCGTATTGGACCCCAAAGAAAAGCAGAAATACACAGACATGGCCAAGGAG

Function

GO: NA

KEGG:

id description
ko03000 Transcription factors

Ensembl:

ensembl_id ENSDART00000137964

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006074 lncRNA downstream 37273 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005770 lncRNA downstream 84120 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 116730 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00006072 lncRNA downstream 116745 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00005269 lncRNA upstream 608697 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006075 lncRNA upstream 746765 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005294 lncRNA upstream 2743347 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 2743347 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00006077 lncRNA upstream 3558306 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00005256 mRNA downstream 18627 28477392 ~ 28483672 (-) False XLOC_002835
TCONS_00005255 mRNA downstream 25276 28473509 ~ 28477023 (-) False XLOC_002835
TCONS_00005249 mRNA downstream 106679 28392426 ~ 28395620 (-) True XLOC_002829
TCONS_00005246 mRNA downstream 121380 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005259 mRNA upstream 212244 28731749 ~ 28761454 (-) False XLOC_002836
TCONS_00005260 mRNA upstream 213516 28733021 ~ 28835771 (-) False XLOC_002836
TCONS_00005261 mRNA upstream 217371 28736876 ~ 28835812 (-) True XLOC_002836
TCONS_00005265 mRNA upstream 568305 29087810 ~ 29101849 (-) False XLOC_002839
TCONS_00005264 mRNA upstream 568305 29087810 ~ 29101849 (-) False XLOC_002839
TCONS_00005252 other downstream 47128 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005251 other downstream 53431 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005250 other downstream 58559 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005248 other downstream 129814 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005238 other downstream 209340 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005262 other upstream 402630 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005263 other upstream 404012 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005273 other upstream 1188563 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005276 other upstream 1216681 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005286 other upstream 2011638 30531143 ~ 30531257 (-) True XLOC_002854

Expression Profile

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