RNA id: TCONS_00005440


Basic Information

Item Value
RNA id TCONS_00005440
length 869
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_002948
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36720166 ~ 36726188 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGATCAACTCGCAGCGCTATGAAATTGGCGCTGAGCTGGGCAAAGGAGGCTTTGGAACGGTTTTCGCAGGGACCCGTTTACAAGATGGCCTTCAGGTTGCAGTAAAAATTGCTGATTTCAAAGTGAAGCCAGTCATCCATGTTGATGATTTTGATGAGCCACTTCCATCGGAGATCGCTCTGCACTTTCTTGCCAATAAAGGCCCCAAAGTGAATGAACTCGTTCAGCTCCTGGACTGGAAGGTGGAGGCTGATCGCTACATTATGGTCCTAGAGCGGCCCATACCCTGTGTGAGCGTGGGGGATTTTTTAAGAGGCTACAAAGGCAGAATCCCAGAGCACGTGTTGCAGAAAATCATGTACCACACAACAGTTGCGGCTGACACATGCAACACGCGTGGAGTGCTCCACCGCGATATCAAGCCTGACAACTTGCTGATGAACCCGAAGACCTTTGAAGTTAAACTGATTGACTTCGGGTGCGGTGACCTGCTTACTGATGACTATTACAGTCACTACTTAGGCACAATGCATTACTGCCCTCCTGAGTTTAACACGGCTGGTTATTACTTCGGGGAGCCAGCGACAGTGTGGTCACTAGGAATTCTCCAGTATCTCCTAATGTTCAAAAAATTTCCAAAAAGCGATGACCTCCTCAAGTTGAAAACAAGATATGTACTGCAATTTGGAAGGTCAAAAGaaTGCAGTGATTTTATCCGAAGTTGTCTGGAGATTAACTTCCCCTTGCGGCCCACGTTGCAAGCACTGCGTGTCCATGACTGGTTTAAGGTAATGAAAGGATTTTGAAATCAAATTAATCTGTCATGAGCTGAGTTTCCATCCTGATGTGAAGCACATCTTTTCTAAGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000122132

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005437 lncRNA downstream 37644 36679548 ~ 36682522 (-) False XLOC_002946
TCONS_00006100 lncRNA downstream 57555 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005434 lncRNA downstream 57566 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006099 lncRNA downstream 69262 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00006098 lncRNA downstream 109265 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00005446 lncRNA upstream 82090 36803816 ~ 36807660 (-) True XLOC_002951
TCONS_00005450 lncRNA upstream 97651 36819377 ~ 36820823 (-) True XLOC_002952
TCONS_00005454 lncRNA upstream 319352 37041078 ~ 37042232 (-) True XLOC_002955
TCONS_00005774 lncRNA upstream 696508 37418234 ~ 37476245 (-) True XLOC_002958
TCONS_00006101 lncRNA upstream 763686 37485412 ~ 37487685 (-) False XLOC_002959
TCONS_00005439 mRNA downstream 28485 36684000 ~ 36691681 (-) True XLOC_002947
TCONS_00005436 mRNA downstream 37651 36673404 ~ 36682515 (-) False XLOC_002946
TCONS_00005435 mRNA downstream 37657 36673387 ~ 36682509 (-) False XLOC_002946
TCONS_00005433 mRNA downstream 86240 36627741 ~ 36633926 (-) True XLOC_002943
TCONS_00005431 mRNA downstream 86284 36613035 ~ 36633882 (-) False XLOC_002943
TCONS_00005442 mRNA upstream 9313 36731039 ~ 36738619 (-) False XLOC_002949
TCONS_00005443 mRNA upstream 10947 36732673 ~ 36738642 (-) True XLOC_002949
TCONS_00005444 mRNA upstream 63030 36784756 ~ 36793412 (-) True XLOC_002950
TCONS_00005445 mRNA upstream 74135 36795861 ~ 36808348 (-) False XLOC_002951
TCONS_00005447 mRNA upstream 89646 36811372 ~ 36825984 (-) False XLOC_002952
TCONS_00005438 other downstream 37652 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005427 other downstream 217835 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005410 other downstream 556872 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 1065812 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 1099717 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005456 other upstream 630754 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1329926 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1350351 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005463 other upstream 1352586 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005467 other upstream 1569161 38290887 ~ 38316070 (-) False XLOC_002965

Expression Profile

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