RNA id: TCONS_00005511


Basic Information

Item Value
RNA id TCONS_00005511
length 1053
RNA type mRNA
GC content 0.38
exon number 1
gene id XLOC_002997
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40447708 ~ 40448760 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAAAGAACAGAAaggagagcagaacaaactcctaACAGGAGGAGACTCACTCATGGCCTACGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTCAAAGGAAAAAACTCAAGTCATGGATATATCgtcatatatttgtttgtgtCACTGTTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTAAATGATCTGCTAATTGGACTCTTCATGCCTGTAGAGGCCATCAGACTGACTGAGACGTGTTGGTATTTTGGAGACACTTTCTGTGGActtcatttattatttgtgtcATTACTTCTTGCAGCATCTCTGAGTAATTTGGTTTTAATTGCTGTTGATCGTTATGTGGCTGTGTGTCACCCTTTACTGTACCCACAGAAAATAACCATGACTAAAACACTAATGAGTATCTGTCTGAACTGGGTTTGTTTGTCAGCTTATATCATTGCCCTTCTAACCAATTATGGATATTTTGACACTTCACTCAAAACAGATGTGTGTTATGGGGAGTGTTTGTTCATGTCAAGTTTCAGTTTGGTAATGACTGATCTGTTCATGTCTTTTATTTTTCCTTGTTTTCTGATAATCACTTTGTATTTGAGGATTTTCTATGTCGTTCATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGTTGGTAAATGTGTAATGGAGGGTTCAGTGAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACTTTAGGAATTATTGTGTCAGTTTATCTGCTTTGCTGGATTCCATATTTTATTTGTTCTCTAACTGTAAACTCTTCTGCAActataaatagtttattatttgcTGTGTATGCTAACTCAGGTCTGAATCCTCtggtttatgctttattttacccCTGGTTTAAGaagacagctaaactcatcttaACCCTGAAAATATTTCATTCTGCATCTTCTCTGATCAATATTTTTACAGAACATTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000168190

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006122 lncRNA downstream 1357620 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 1783474 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 1920998 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 1932177 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 2016613 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00005520 lncRNA upstream 40877 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005521 lncRNA upstream 49399 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 172221 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 402377 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 919348 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00005510 mRNA downstream 3962 40442694 ~ 40443746 (-) True XLOC_002996
TCONS_00005509 mRNA downstream 17961 40428695 ~ 40429747 (-) True XLOC_002995
TCONS_00005508 mRNA downstream 26649 40420052 ~ 40421059 (-) True XLOC_002994
TCONS_00005506 mRNA downstream 31624 40415062 ~ 40416084 (-) True XLOC_002992
TCONS_00005505 mRNA downstream 36824 40409832 ~ 40410884 (-) True XLOC_002991
TCONS_00005512 mRNA upstream 4900 40453660 ~ 40454685 (-) True XLOC_002998
TCONS_00005513 mRNA upstream 13109 40461869 ~ 40462894 (-) True XLOC_002999
TCONS_00005515 mRNA upstream 22869 40471629 ~ 40471895 (-) True XLOC_003001
TCONS_00005516 mRNA upstream 23522 40472282 ~ 40484640 (-) False XLOC_003002
TCONS_00005517 mRNA upstream 24843 40473603 ~ 40474628 (-) False XLOC_003002
TCONS_00005507 other downstream 28649 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005503 other downstream 43377 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005499 other downstream 63276 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005497 other downstream 71712 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005472 other downstream 2013209 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005514 other upstream 19612 40468372 ~ 40469394 (-) True XLOC_003000
TCONS_00005525 other upstream 67989 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005526 other upstream 72063 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005531 other upstream 88680 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005540 other upstream 292570 40741330 ~ 40741447 (-) True XLOC_003024

Expression Profile

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