RNA id: TCONS_00005526


Basic Information

Item Value
RNA id TCONS_00005526
length 278
RNA type unprocessed_pseudogene
GC content 0.35
exon number 1
gene id XLOC_003010
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40520823 ~ 40521100 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATCTGCTAGTTTTGCTTATCAGATTATGTCACTGTCCCTTCAAACAGCAATTGACATTTTGACACTACATATAGAACAGATGTGTGTTATGGACAGTGTTCTCTAATGATACGTTTTGCATGGATAGTCACCAATGTGTACCATACTTTGCTGTTTCCTTGTGCTGTGATGATAACTTTATATTTGaggtttttctgtcatttttctgtGTTGTACACCAGCAAGTGTAAGTTAAACTTTGATGAAGAATGGTAAATGTGTAATGGAAGGTTTAGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136549

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005521 lncRNA downstream 21614 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 30186 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006122 lncRNA downstream 1430735 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 1856589 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 1994113 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00005779 lncRNA upstream 99881 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 330037 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 847008 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006124 lncRNA upstream 1461809 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 1461809 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005524 mRNA downstream 6180 40513612 ~ 40514643 (-) True XLOC_003008
TCONS_00005523 mRNA downstream 12266 40507529 ~ 40508557 (-) True XLOC_003007
TCONS_00005522 mRNA downstream 17407 40502370 ~ 40503416 (-) True XLOC_003006
TCONS_00005519 mRNA downstream 36292 40483512 ~ 40484531 (-) True XLOC_003002
TCONS_00005518 mRNA downstream 40912 40478928 ~ 40479911 (-) True XLOC_003003
TCONS_00005527 mRNA upstream 2607 40523707 ~ 40524741 (-) True XLOC_003011
TCONS_00005528 mRNA upstream 6143 40527243 ~ 40528259 (-) True XLOC_003012
TCONS_00005529 mRNA upstream 10029 40531129 ~ 40532157 (-) True XLOC_003013
TCONS_00005530 mRNA upstream 14877 40535977 ~ 40536990 (-) True XLOC_003014
TCONS_00005532 mRNA upstream 21810 40542910 ~ 40543923 (-) True XLOC_003016
TCONS_00005525 other downstream 3225 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005514 other downstream 51429 40468372 ~ 40469394 (-) True XLOC_003000
TCONS_00005507 other downstream 101764 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005503 other downstream 116492 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005499 other downstream 136391 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005531 other upstream 16340 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005540 other upstream 220230 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005547 other upstream 382021 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005570 other upstream 1448791 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 1590472 42111572 ~ 42131408 (-) True XLOC_003044