Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000056 |
| length | 707 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 5 |
| gene id | XLOC_000025 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 594584 ~ 608247 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007520 | myoblast fusion | biological_process |
| GO:0098609 | cell-cell adhesion | biological_process |
| GO:0048534 | hematopoietic or lymphoid organ development | biological_process |
| GO:0098636 | protein complex involved in cell adhesion | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0070160 | tight junction | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-031204-3 | Enables protein heterodimerization activity. Acts upstream of or within hematopoietic or lymphoid organ development and myoblast fusion. Predicted to be located in tight junction. Predicted to be integral component of plasma membrane. Predicted to be part of protein complex involved in cell adhesion. Is expressed in several structures, including blood vessel; musculature system; myoblast; nervous system; and pectoral fin bud. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human JAM2 (junctional adhesion molecule 2). |
| ensembl_id | ENSDART00000135944 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000055 | lncRNA | upstream | 8083 | 580688 ~ 586501 (+) | True | XLOC_000023 |
| TCONS_00003003 | lncRNA | upstream | 236022 | 355481 ~ 358562 (+) | False | XLOC_000018 |
| TCONS_00003004 | lncRNA | upstream | 236022 | 355771 ~ 358562 (+) | True | XLOC_000018 |
| TCONS_00002804 | lncRNA | upstream | 352877 | 237391 ~ 241707 (+) | True | XLOC_000015 |
| TCONS_00002803 | lncRNA | upstream | 357161 | 236400 ~ 237423 (+) | False | XLOC_000015 |
| TCONS_00003005 | lncRNA | downstream | 191579 | 794976 ~ 898180 (+) | False | XLOC_000026 |
| TCONS_00003006 | lncRNA | downstream | 191579 | 794976 ~ 911551 (+) | True | XLOC_000026 |
| TCONS_00003007 | lncRNA | downstream | 412415 | 1015812 ~ 1033638 (+) | False | XLOC_000028 |
| TCONS_00002805 | lncRNA | downstream | 412427 | 1015824 ~ 1023334 (+) | True | XLOC_000028 |
| TCONS_00003008 | lncRNA | downstream | 711892 | 1315289 ~ 1321953 (+) | False | XLOC_000030 |
| TCONS_00000054 | mRNA | upstream | 3253 | 580642 ~ 591331 (+) | False | XLOC_000023 |
| TCONS_00000051 | mRNA | upstream | 3256 | 532807 ~ 591328 (+) | False | XLOC_000023 |
| TCONS_00000050 | mRNA | upstream | 45063 | 532766 ~ 549521 (+) | False | XLOC_000023 |
| TCONS_00000049 | mRNA | upstream | 62155 | 524821 ~ 532429 (+) | True | XLOC_000022 |
| TCONS_00000048 | mRNA | upstream | 63649 | 524388 ~ 530935 (+) | False | XLOC_000022 |
| TCONS_00000058 | mRNA | downstream | 730 | 604127 ~ 608247 (+) | True | XLOC_000025 |
| TCONS_00000059 | mRNA | downstream | 358210 | 961607 ~ 970951 (+) | True | XLOC_000027 |
| TCONS_00000062 | mRNA | downstream | 996582 | 1599979 ~ 1614500 (+) | True | XLOC_000033 |
| TCONS_00000063 | mRNA | downstream | 1086378 | 1689775 ~ 1706159 (+) | False | XLOC_000035 |
| TCONS_00000066 | mRNA | downstream | 1108743 | 1712140 ~ 1731564 (+) | False | XLOC_000036 |
| TCONS_00000053 | other | upstream | 18063 | 576444 ~ 576521 (+) | True | XLOC_000024 |
| TCONS_00000052 | other | upstream | 48367 | 537589 ~ 546217 (+) | False | XLOC_000023 |
| TCONS_00000047 | other | upstream | 79262 | 514013 ~ 515322 (+) | True | XLOC_000021 |
| TCONS_00000036 | other | upstream | 300690 | 260040 ~ 293894 (+) | False | XLOC_000017 |
| TCONS_00000003 | other | upstream | 581327 | 12129 ~ 13257 (+) | False | XLOC_000001 |
| TCONS_00000060 | other | downstream | 615294 | 1218691 ~ 1218805 (+) | True | XLOC_000029 |
| TCONS_00000061 | other | downstream | 972086 | 1575483 ~ 1575563 (+) | True | XLOC_000032 |
| TCONS_00000067 | other | downstream | 1108756 | 1712153 ~ 1718527 (+) | False | XLOC_000036 |
| TCONS_00000068 | other | downstream | 1114300 | 1717697 ~ 1723157 (+) | False | XLOC_000036 |
| TCONS_00000069 | other | downstream | 1115214 | 1718611 ~ 1793371 (+) | False | XLOC_000036 |
