RNA id: TCONS_00064498


Basic Information

Item Value
RNA id TCONS_00064498
length 2499
RNA type mRNA
GC content 0.50
exon number 28
gene id XLOC_033204
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 53263854 ~ 53282595 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGTGCAGATAAACGGGTTAGCCGTACAGAGCGCAGCGGCAGGTATGGCTCTGAACAGTCTCGCGATGATGACCGAAGGGATCGGCGAGATCGAGATGATCGCGGATATGACTCTCATCGCTGGAGTGATGACCGCCGCAGTGACCGTTATGATGGTGATAGAGGTGATCGAGGCGACCGAGGTGATCGAGGCGACAGAGGTGATCGATACTGGAGCAGAGACAGTCCTGAGCGAGGGAGGAAGCGGCGCAACAGTGATGGATCAGAGGACGGACATCATTCAGATGGTGATTACTCTGAGCACGATTACAGAGGAGATCCAGCCGATGAAAAGGAGAGCAAGACCATCATGCTCCGGGGTCTGCCCATGAACACGTCAGAGGCGGATATTCGAGCAGCCATTGACTTGCTGGAAGGACCCAAGCCAATGGACGTGAGGCTGATGAAAAAGAGAACAGGTATAAGCCGAGGTTTCGCCTTCGTGGAGTTTTATCACTTGCAAGCTGCTACCCGATGGATGGAGACCAATCAGAAACTGCTGTGCGTTCAAGGCAAGCCTGTTGTCGTGCACTACAGCAACAACCGTCACAAGTTTGAGGATTGGCTCTGCAACTCATGTGGCCTGTACAATTTCCGGAGGAGGCTGAAGTGCTTCAGGTGTGGCGCAGCTAAAGCGGattCTGAATCCAGCAGCACCACAGGAACCACAGAAACCCAGCCAAGTGGAGATTACTATGGCGATACCATCATCTTGAGGAACATCGCTCCTCTCTCTACTGTTGAAGCCATTCTGGGGGCTCTTGCTCCTTTTGCAAACCTCTTGCCTGGCAACATCCGCCTCATCAAAGACAAACAGACAGGCCAAAACAGAGGATTTGCCTTTGTCCAACTCGCTTCTCCTCTGcttgcagctggttccgcattatccatcttcgttttgaagaatcctccttttctagatgggtggcacggtggcccagtgttcttaccaagccagctaaagtttctgtttttgtgcagagtttacatgttctccctgtgcttatgtgggttttccctgggttccccaggtttcctcccaccgtccaaaaacatgcaacttaaattagtaagtagttatctcttaagagcaatcgctatctgttcattagctactacagcagtttataatcaatcatcagctaagtgtaatctcttACTTTTTAATCACCTTCTGGGCCTACAGCCGCCACTTAAACTGGATGGCAAGACTATTGGTGTCGACTTGTTTAACCCTGTAAAAGTCTACAAAAACCCTGTGTATgcaaagatTGAAGGCAAAGCCCAGTCCATTACAGCCACTGCCACCATTTCTGCCCCAGCAACCTCTGCAGTCTCTGCTACAGCCACAGCAATATCTACCTCTCAGGAAAATCAAGCCAAtgtcccagacacttcctcctaTCAGTACGATGAGTCTTCTGGGTATTATTACGACCCCATCACTGGCCTCTACTATGACCCAAACACACAATACTACTACAACTCTCAGACTCAGCAGTATCTGTACTGGGATGGAGAGAAGCAGGCGTATTTACCCGCTGTGGACAGTAACGCTCAAAATGCCATGGCCTCCACTTCCACTCCTCAGAAAGAGGGCAAAGAGAAGAAAGAGAAACCTAAGAGCAAAACTGCTCAGCAGATTGCAAAGGACATGGAGCGCTGGGCCAAGAGTCtaaacaaacagaaagaaaacTTCAAGAGCAGCTTCCAGCCCATCAGTCAGGAGGAGAGGAGAGAGGCAGCGGCGGCAGATGCAGGATTCACGCTGTTTGAGAAGAAGCCTGGAGCATTGGAGAGGCTTGTAACAGAAGCATCCAAAATGGCAGAAGAAGAGAGTTGTTCATCAAAGGTGGGACTGGTGGCTGCGTACAGTGGCGACAGTGAACCAGAGGAGCTTATAGATGGAGACGACAGAGAGGACAAGCTGACAGACTGGAAAAAGCTCGCTTGTCTGTTGTGCCGGAGGCAGTTTCCCAGTAAAGAAGCTCTGATTCGCCATCAGCAGCTCTCAGACCTACACAGGcaaaACTTGGAGGTTATGAGGAGATCCAAACTGAGTGAAGCAGAACTGGAGGAGCTGGAAAGAAAAGAGACAGAGATGAAGTACAGGGACAGGGCTGCTGAAAGAAGAGAGAAATACGGCATCCCTGAACCACCCGTGCCTAAGAAAAGGAAATACACCGCACCAACACCTGTAGTAAATTACGAGCAGCCCACGAAGGACGGCCTGAACAGTGATAATATCGGCAATAAGATGCTGCAAGCTATGGGGTGGAAGGAAGGCAAAGGTCTGGGTAGAAACCAGCAGGGCATCACAACACCTATTgagGCTCAGTTGAGAGCGAAGGGAGCCGGTTTGGGAACTAAAGGAAGCAGCTACAATCTCACGGCTTCTGACACATACAAGGATGCCGTCCGGAAAGCCATGTTTGCCCGCTTTACAGAAATCGAGTAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3022 Predicted to enable RNA binding activity and metal ion binding activity. Predicted to act upstream of or within RNA processing; regulation of alternative mRNA splicing, via spliceosome; and regulation of apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of spliceosomal complex. Orthologous to human RBM5 (RNA binding motif protein 5).

Ensembl:

ensembl_id ENSDART00000157621

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064758 lncRNA downstream 5786 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064474 lncRNA downstream 1029135 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA downstream 1029135 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA downstream 1029206 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00065239 lncRNA downstream 1229198 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00064759 lncRNA upstream 329597 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 883414 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 883414 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00065241 lncRNA upstream 883414 54164932 ~ 54174073 (-) True XLOC_033212
TCONS_00064516 lncRNA upstream 895555 54177073 ~ 54180647 (-) False XLOC_033213
TCONS_00064497 mRNA downstream 59046 53152876 ~ 53204808 (-) True XLOC_033202
TCONS_00064496 mRNA downstream 103395 53147446 ~ 53160459 (-) False XLOC_033202
TCONS_00064494 mRNA downstream 119518 53050166 ~ 53144336 (-) False XLOC_033201
TCONS_00064495 mRNA downstream 120187 53052564 ~ 53143667 (-) True XLOC_033201
TCONS_00064493 mRNA downstream 215563 53041180 ~ 53048291 (-) True XLOC_033200
TCONS_00064503 mRNA upstream 23459 53304977 ~ 53334259 (-) False XLOC_033205
TCONS_00064504 mRNA upstream 24928 53306446 ~ 53329059 (-) False XLOC_033205
TCONS_00064505 mRNA upstream 28314 53309832 ~ 53326421 (-) True XLOC_033205
TCONS_00064506 mRNA upstream 91980 53373498 ~ 53391727 (-) True XLOC_033206
TCONS_00064507 mRNA upstream 112607 53394125 ~ 53426773 (-) True XLOC_033207
TCONS_00064492 other downstream 230743 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064491 other downstream 340365 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064464 other downstream 1722366 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 2507406 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 2516309 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064524 other upstream 1224940 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 1225587 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064531 other upstream 1533403 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064542 other upstream 2265617 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 2273744 55555262 ~ 55555396 (-) True XLOC_033237

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_16108047_16115989.mRNA True 2225 mRNA 0.50 18 CI01000340 16107787 ~ 16115989 (-)