RNA id: TCONS_00065540


Basic Information

Item Value
RNA id TCONS_00065540
length 264
RNA type mRNA
GC content 0.34
exon number 13
gene id XLOC_033489
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 11459235 ~ 11624833 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGAACAAaacagTTCCAGAAACACAAGTGCTcatttaaaTTATTATAGAAAGCATCGctcagaatgGGTTGgctgcagtaggactgTTGATTTGGTGACatactggaaatattcctcagagatATCTGGCAGTGTTTATtatttattcaattatttatacactacagatctaaagtttaaaagatgcttgcacAGCCTATTTACagggttaaaaatccttaaaaaaacagCTTTCAAAGACTTTAGGAAacactgctctgtt

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04052 Cytokines and growth factors

ZFIN:

id description
ZDB-GENE-130103-3 Human ortholog(s) of this gene implicated in asthma and prostate cancer. Orthologous to human IL16 (interleukin 16).

Ensembl:

ensembl_id ENSDART00000183559

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068782 lncRNA upstream 547653 11034549 ~ 11035613 (+) True XLOC_033485
TCONS_00065526 lncRNA upstream 782379 10701732 ~ 10800887 (+) False XLOC_033483
TCONS_00065542 lncRNA downstream 64825 11689658 ~ 11734096 (+) False XLOC_033491
TCONS_00068784 lncRNA downstream 64844 11689677 ~ 11819578 (+) False XLOC_033491
TCONS_00068785 lncRNA downstream 64852 11689685 ~ 11734096 (+) False XLOC_033491
TCONS_00065541 lncRNA downstream 64858 11689691 ~ 11704566 (+) False XLOC_033491
TCONS_00068786 lncRNA downstream 64905 11689738 ~ 11819578 (+) False XLOC_033491
TCONS_00065539 mRNA upstream 2518 11543999 ~ 11580748 (+) False XLOC_033489
TCONS_00065537 mRNA upstream 190073 11390462 ~ 11393193 (+) True XLOC_033488
TCONS_00065535 mRNA upstream 240655 11197940 ~ 11342611 (+) True XLOC_033486
TCONS_00065534 mRNA upstream 243514 11197022 ~ 11339752 (+) False XLOC_033486
TCONS_00065532 mRNA upstream 577347 10911417 ~ 11005919 (+) False XLOC_033484
TCONS_00065545 mRNA downstream 746228 12371061 ~ 12380200 (+) True XLOC_033494
TCONS_00065546 mRNA downstream 1210215 12835048 ~ 12836225 (+) True XLOC_033495
TCONS_00065548 mRNA downstream 1303111 12927944 ~ 12936708 (+) False XLOC_033497
TCONS_00065549 mRNA downstream 1306563 12931396 ~ 12936398 (+) True XLOC_033497
TCONS_00065550 mRNA downstream 1325674 12950507 ~ 12956434 (+) False XLOC_033498
TCONS_00065536 other upstream 369742 11213408 ~ 11213524 (+) True XLOC_033487
TCONS_00065525 other upstream 899659 10683487 ~ 10683607 (+) True XLOC_033482
TCONS_00065522 other upstream 1000641 10578349 ~ 10582625 (+) True XLOC_033479
TCONS_00065516 other upstream 1335079 10248072 ~ 10248187 (+) True XLOC_033477
TCONS_00065503 other upstream 2277685 9290965 ~ 9305581 (+) False XLOC_033469
TCONS_00065544 other downstream 547296 12172129 ~ 12172246 (+) True XLOC_033493
TCONS_00065547 other downstream 1228270 12853103 ~ 12853217 (+) True XLOC_033496
TCONS_00065558 other downstream 1715310 13340143 ~ 13340268 (+) True XLOC_033501
TCONS_00065588 other downstream 2592137 14216970 ~ 14266258 (+) False XLOC_033514
TCONS_00065590 other downstream 2656260 14281093 ~ 14281225 (+) True XLOC_033515