Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00065556 |
| length | 1776 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 10 |
| gene id | XLOC_033500 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 13039426 ~ 13338283 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071277 | cellular response to calcium ion | biological_process |
| GO:0006887 | exocytosis | biological_process |
| GO:0071912 | asynchronous neurotransmitter secretion | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0017156 | calcium-ion regulated exocytosis | biological_process |
| GO:0017158 | regulation of calcium ion-dependent exocytosis | biological_process |
| GO:0014059 | regulation of dopamine secretion | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0070382 | exocytic vesicle | cellular_component |
| GO:0008021 | synaptic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0001786 | phosphatidylserine binding | molecular_function |
| GO:0005544 | calcium-dependent phospholipid binding | molecular_function |
| GO:0000149 | SNARE binding | molecular_function |
| GO:0030276 | clathrin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090601-6 | Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Acts upstream of or within asynchronous neurotransmitter secretion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and synaptic vesicle. Is expressed in female organism and motor neurons. Orthologous to human SYT7 (synaptotagmin 7). |
| ensembl_id | ENSDART00000101231 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00068787 | lncRNA | upstream | 1170823 | 11868634 ~ 11869584 (+) | True | XLOC_033492 |
| TCONS_00068786 | lncRNA | upstream | 1220829 | 11689738 ~ 11819578 (+) | False | XLOC_033491 |
| TCONS_00068785 | lncRNA | upstream | 1306311 | 11689685 ~ 11734096 (+) | False | XLOC_033491 |
| TCONS_00068556 | lncRNA | downstream | 19538 | 13337158 ~ 13338283 (+) | True | XLOC_033500 |
| TCONS_00065562 | lncRNA | downstream | 138291 | 13455911 ~ 13471148 (+) | False | XLOC_033502 |
| TCONS_00065564 | lncRNA | downstream | 163715 | 13481335 ~ 13484788 (+) | True | XLOC_033502 |
| TCONS_00065566 | lncRNA | downstream | 179784 | 13497404 ~ 13498287 (+) | True | XLOC_033503 |
| TCONS_00068788 | lncRNA | downstream | 480024 | 13797644 ~ 13800139 (+) | True | XLOC_033509 |
| TCONS_00065553 | mRNA | upstream | 40494 | 12976226 ~ 12999913 (+) | True | XLOC_033499 |
| TCONS_00065552 | mRNA | upstream | 40763 | 12976173 ~ 12999644 (+) | False | XLOC_033499 |
| TCONS_00065550 | mRNA | upstream | 83973 | 12950507 ~ 12956434 (+) | False | XLOC_033498 |
| TCONS_00065551 | mRNA | upstream | 84214 | 12950649 ~ 12956193 (+) | True | XLOC_033498 |
| TCONS_00065549 | mRNA | upstream | 104009 | 12931396 ~ 12936398 (+) | True | XLOC_033497 |
| TCONS_00065559 | mRNA | downstream | 65232 | 13382852 ~ 13487217 (+) | False | XLOC_033502 |
| TCONS_00065561 | mRNA | downstream | 101192 | 13418812 ~ 13487378 (+) | False | XLOC_033502 |
| TCONS_00065560 | mRNA | downstream | 101192 | 13418812 ~ 13487378 (+) | False | XLOC_033502 |
| TCONS_00065563 | mRNA | downstream | 147258 | 13464878 ~ 13481674 (+) | False | XLOC_033502 |
| TCONS_00065565 | mRNA | downstream | 173832 | 13491452 ~ 13514737 (+) | False | XLOC_033503 |
| TCONS_00065547 | other | upstream | 187190 | 12853103 ~ 12853217 (+) | True | XLOC_033496 |
| TCONS_00065544 | other | upstream | 868161 | 12172129 ~ 12172246 (+) | True | XLOC_033493 |
| TCONS_00065536 | other | upstream | 1826883 | 11213408 ~ 11213524 (+) | True | XLOC_033487 |
| TCONS_00065525 | other | upstream | 2356800 | 10683487 ~ 10683607 (+) | True | XLOC_033482 |
| TCONS_00065522 | other | upstream | 2457782 | 10578349 ~ 10582625 (+) | True | XLOC_033479 |
| TCONS_00065558 | other | downstream | 22523 | 13340143 ~ 13340268 (+) | True | XLOC_033501 |
| TCONS_00065588 | other | downstream | 899350 | 14216970 ~ 14266258 (+) | False | XLOC_033514 |
| TCONS_00065590 | other | downstream | 963473 | 14281093 ~ 14281225 (+) | True | XLOC_033515 |
| TCONS_00065597 | other | downstream | 1815357 | 15132977 ~ 15133091 (+) | True | XLOC_033520 |
| TCONS_00065599 | other | downstream | 1962929 | 15280549 ~ 15293242 (+) | True | XLOC_033521 |
