RNA id: unassigned_transcript_29


Basic Information

Item Value
RNA id unassigned_transcript_29
length 72
RNA type tRNA
GC content 0.55
exon number 1
gene id trnae-uuc_27
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7188184 ~ 7188255 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCAGGCGGCCTGGGTTCAACTCCCGGTATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3320 lncRNA upstream 39700 7147274 ~ 7148484 (+) False G2374
TU3327 lncRNA upstream 39700 7147274 ~ 7148484 (+) True G2374
TU3334 lncRNA upstream 39700 7147274 ~ 7148484 (+) False G2374
TU3301 lncRNA upstream 101925 7085736 ~ 7086259 (+) True G2361
TU3351 lncRNA downstream 53566 7241821 ~ 7243472 (+) True G2386
TU3352 lncRNA downstream 53566 7241821 ~ 7243472 (+) False G2386
TU3407 lncRNA downstream 196877 7385132 ~ 7385353 (+) True G2428
TU3471 lncRNA downstream 365785 7554040 ~ 7557441 (+) True G2486
TU3497 lncRNA downstream 400388 7588643 ~ 7591076 (+) True G2505
XM_039810088.1 mRNA upstream 424387 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 424387 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 465226 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 528865 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 659236 6510225 ~ 6528948 (+) True LOC120565047
XM_039810376.1 mRNA downstream 49816 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 201844 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 424668 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 505330 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 530701 7718956 ~ 7743994 (+) True LOC120563246
unassigned_transcript_28 other upstream 439 7187674 ~ 7187745 (+) True trnae-uuc_26
unassigned_transcript_27 other upstream 2447 7185666 ~ 7185737 (+) True trnae-uuc_25
unassigned_transcript_26 other upstream 2965 7185148 ~ 7185219 (+) True trnae-uuc_24
unassigned_transcript_25 other upstream 3477 7184636 ~ 7184707 (+) True trnae-uuc_23
unassigned_transcript_24 other upstream 3984 7184129 ~ 7184200 (+) True trnae-uuc_22
unassigned_transcript_30 other downstream 2015 7190270 ~ 7190341 (+) True trnae-uuc_28
unassigned_transcript_31 other downstream 4060 7192315 ~ 7192386 (+) True trnae-uuc_29
unassigned_transcript_32 other downstream 6408 7194663 ~ 7194734 (+) True trnae-uuc_30
unassigned_transcript_33 other downstream 6911 7195166 ~ 7195237 (+) True trnae-uuc_31
unassigned_transcript_34 other downstream 8935 7197190 ~ 7197261 (+) True trnae-uuc_32