RNA id: unassigned_transcript_31


Basic Information

Item Value
RNA id unassigned_transcript_31
length 72
RNA type tRNA
GC content 0.53
exon number 1
gene id trnae-uuc_29
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7192315 ~ 7192386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCGTATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCAGGCGGCCTGGGTTCAACTCCCGGTATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3320 lncRNA upstream 43831 7147274 ~ 7148484 (+) False G2374
TU3327 lncRNA upstream 43831 7147274 ~ 7148484 (+) True G2374
TU3334 lncRNA upstream 43831 7147274 ~ 7148484 (+) False G2374
TU3301 lncRNA upstream 106056 7085736 ~ 7086259 (+) True G2361
TU3351 lncRNA downstream 49435 7241821 ~ 7243472 (+) True G2386
TU3352 lncRNA downstream 49435 7241821 ~ 7243472 (+) False G2386
TU3407 lncRNA downstream 192746 7385132 ~ 7385353 (+) True G2428
TU3471 lncRNA downstream 361654 7554040 ~ 7557441 (+) True G2486
TU3497 lncRNA downstream 396257 7588643 ~ 7591076 (+) True G2505
XM_039810088.1 mRNA upstream 428518 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 428518 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 469357 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 532996 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 663367 6510225 ~ 6528948 (+) True LOC120565047
XM_039810376.1 mRNA downstream 45685 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 197713 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 420537 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 501199 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 526570 7718956 ~ 7743994 (+) True LOC120563246
unassigned_transcript_30 other upstream 1974 7190270 ~ 7190341 (+) True trnae-uuc_28
unassigned_transcript_29 other upstream 4060 7188184 ~ 7188255 (+) True trnae-uuc_27
unassigned_transcript_28 other upstream 4570 7187674 ~ 7187745 (+) True trnae-uuc_26
unassigned_transcript_27 other upstream 6578 7185666 ~ 7185737 (+) True trnae-uuc_25
unassigned_transcript_26 other upstream 7096 7185148 ~ 7185219 (+) True trnae-uuc_24
unassigned_transcript_32 other downstream 2277 7194663 ~ 7194734 (+) True trnae-uuc_30
unassigned_transcript_33 other downstream 2780 7195166 ~ 7195237 (+) True trnae-uuc_31
unassigned_transcript_34 other downstream 4804 7197190 ~ 7197261 (+) True trnae-uuc_32
unassigned_transcript_35 other downstream 5316 7197702 ~ 7197773 (+) True trnae-uuc_33
unassigned_transcript_36 other downstream 5813 7198199 ~ 7198270 (+) True trnae-uuc_34