RNA id: unassigned_transcript_35


Basic Information

Item Value
RNA id unassigned_transcript_35
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnae-uuc_33
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7197702 ~ 7197773 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCAGGCGGCCTGGGTTCAACTCCCAGTATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3320 lncRNA upstream 49218 7147274 ~ 7148484 (+) False G2374
TU3327 lncRNA upstream 49218 7147274 ~ 7148484 (+) True G2374
TU3334 lncRNA upstream 49218 7147274 ~ 7148484 (+) False G2374
TU3301 lncRNA upstream 111443 7085736 ~ 7086259 (+) True G2361
TU3351 lncRNA downstream 44048 7241821 ~ 7243472 (+) True G2386
TU3352 lncRNA downstream 44048 7241821 ~ 7243472 (+) False G2386
TU3407 lncRNA downstream 187359 7385132 ~ 7385353 (+) True G2428
TU3471 lncRNA downstream 356267 7554040 ~ 7557441 (+) True G2486
TU3497 lncRNA downstream 390870 7588643 ~ 7591076 (+) True G2505
XM_039810088.1 mRNA upstream 433905 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 433905 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 474744 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 538383 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 668754 6510225 ~ 6528948 (+) True LOC120565047
XM_039810376.1 mRNA downstream 40298 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 192326 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 415150 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 495812 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 521183 7718956 ~ 7743994 (+) True LOC120563246
unassigned_transcript_34 other upstream 441 7197190 ~ 7197261 (+) True trnae-uuc_32
unassigned_transcript_33 other upstream 2465 7195166 ~ 7195237 (+) True trnae-uuc_31
unassigned_transcript_32 other upstream 2968 7194663 ~ 7194734 (+) True trnae-uuc_30
unassigned_transcript_31 other upstream 5316 7192315 ~ 7192386 (+) True trnae-uuc_29
unassigned_transcript_30 other upstream 7361 7190270 ~ 7190341 (+) True trnae-uuc_28
unassigned_transcript_36 other downstream 426 7198199 ~ 7198270 (+) True trnae-uuc_34
unassigned_transcript_37 other downstream 933 7198706 ~ 7198777 (+) True trnae-uuc_35
unassigned_transcript_38 other downstream 2471 7200244 ~ 7200315 (+) True trnae-uuc_36
unassigned_transcript_39 other downstream 3481 7201254 ~ 7201325 (+) True trnae-uuc_37
unassigned_transcript_40 other downstream 3993 7201766 ~ 7201837 (+) True trnae-uuc_38