RNA id: unassigned_transcript_45


Basic Information

Item Value
RNA id unassigned_transcript_45
length 72
RNA type tRNA
GC content 0.59
exon number 1
gene id trnae-uuc_43
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7206815 ~ 7206886 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCAGGCGGCCTGGGTTCAACTCCCGGTATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3320 lncRNA upstream 58331 7147274 ~ 7148484 (+) False G2374
TU3327 lncRNA upstream 58331 7147274 ~ 7148484 (+) True G2374
TU3334 lncRNA upstream 58331 7147274 ~ 7148484 (+) False G2374
TU3301 lncRNA upstream 120556 7085736 ~ 7086259 (+) True G2361
TU3351 lncRNA downstream 34935 7241821 ~ 7243472 (+) True G2386
TU3352 lncRNA downstream 34935 7241821 ~ 7243472 (+) False G2386
TU3407 lncRNA downstream 178246 7385132 ~ 7385353 (+) True G2428
TU3471 lncRNA downstream 347154 7554040 ~ 7557441 (+) True G2486
TU3497 lncRNA downstream 381757 7588643 ~ 7591076 (+) True G2505
XM_039810088.1 mRNA upstream 443018 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 443018 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 483857 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 547496 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 677867 6510225 ~ 6528948 (+) True LOC120565047
XM_039810376.1 mRNA downstream 31185 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 183213 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 406037 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 486699 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 512070 7718956 ~ 7743994 (+) True LOC120563246
unassigned_transcript_44 other upstream 1468 7205276 ~ 7205347 (+) True trnae-uuc_42
unassigned_transcript_43 other upstream 2448 7204296 ~ 7204367 (+) True trnae-uuc_41
unassigned_transcript_42 other upstream 3991 7202753 ~ 7202824 (+) True trnae-uuc_40
unassigned_transcript_41 other upstream 4498 7202246 ~ 7202317 (+) True trnae-uuc_39
unassigned_transcript_40 other upstream 4978 7201766 ~ 7201837 (+) True trnae-uuc_38
unassigned_transcript_46 other downstream 436 7207322 ~ 7207393 (+) True trnae-uuc_44
unassigned_transcript_47 other downstream 1973 7208859 ~ 7208930 (+) True trnae-uuc_45
unassigned_transcript_48 other downstream 2485 7209371 ~ 7209442 (+) True trnae-uuc_46
unassigned_transcript_49 other downstream 5048 7211934 ~ 7212005 (+) True trnae-uuc_47
unassigned_transcript_50 other downstream 6077 7212963 ~ 7213034 (+) True trnae-uuc_48