RNA id: TCONS_00068854


Basic Information

Item Value
RNA id TCONS_00068854
length 5367
lncRNA type sense_over
GC content 0.35
exon number 3
gene id XLOC_033746
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26534014 ~ 26542423 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taaattaattaattaaagtctaTTAGAAAAAATTATGTTAGCTTTGTGCGCATGCGCGTTATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGGTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCACAGCCGGATTTCTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATCAagatttttatggtggcgcagtgggaagcgctctcacctcacagcaagaaggtcgctagttcgattctcgactggatcagttggcattttctccccgcgttcgcatgggtttcctccgggtgctccggtttcccccacaagtccaaagacatgcgctataggggaattgggtaagttaaattgtcgtagtgtgtgtgtgtaaatgaaagtgtatggatgtttccaagtgatggtttgcagctggaagggcatccgctgtgtaaaacatgctggatcagttggtggttcatttcgctgtggcgacaccagattaataaagggattaagccgagaagaaaataaattaatatttatttaacttaatgttaatataacactactgatgatttttagctgaatctgtggtACATGGTGATCCAAATAATGGCAGCGAATGAGGATGGGTTTTTCAGTTTAAGAATAAAGTCCAAATCTAAAGCCATGGCTCCTGATGAAGGTCCTGTAAAGTGAAACCATTGGTCTGTGTaagaaatttaacattatttgcaatattagCATTAATCCACGGCCTGGTCAAACAGATGGTTTttgggttgtgagacgtagtttagacgaagttgtcggcgattcttcctattgtaaagtcatgcaatgttcaagtccctgtcgccgatccatcttgcagtgaaaATAAAGCAGCAACGACTACTTTCAAattgaactcggcattagttaaTGAATAAACTTAGAGACCTGGATATCGACACGTCTCTCTGCAACTGGATTATGGACTTTCTGTCTAAaagacctcagaatgttagatcaggccacatctgctccaccatcTTCACACTCAACCCTgatgtaccacagggctgtgtgctgagcctcTTCCTCTACTTCTTTTTTACTAtcaactgtaggcctgtgaaTAGATCCAAcatcatcatcaaatttgcagatgacaccacagtgattggtctaatcagcaataatgataagacggcctacagggaggagatacatcATCTGTCCACTTggccactaccaagccgaccaatcacagagcttgtgctacgtgtcgttgcgatgtgtagttacgttttttgagaggtgcacgtcagccacggcgaagggctatgcgtcagcaccgtagcattggcgtgcgtttgacgcagaagtataaatcagccttaaggaacAACACTTTCCTCAGAGCTGTCCCTTTTTCAACTCTATCCCCCACTAATTATTTTGCCCTCCTAATACACCCCCACTGTCCTCATAACTTGTACTCCTCATTATCAttgcactatttaacatttgcacatttaaaaattaaccattcattgcactacattagactgattcattcatttgaactatacatatactgtacacttgTAATTGTTTATCTACCtgtacacttctgattattaatagcaacctgtacatataataatttattttaaatttctgtttatagctaatacaacctgtatataatgttgatagtacatccatctgtaaatatcactaaaGTTTTTCTAtatctgcactttataacttatacctgtatactgcacttgctgctattacactgctggttagacctaaactgattttcgttgcattgtacttgtacatgtgtaatgacaaagtttaatctaatctaattcatttcttaacgttttccaatttgtcatttatgtatttaactgatcaaatttttattatttacagacaACCAATGTCCATGTCAAAAGAGCGTCTATTCTTCAAGCTCTCTTTACCTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGGTGAGTGCATTATAGTACTAGTGCTTGCACCTGGGCTATAAGAAAGAGCTGCTTTGTTCAGAGGCTGAGGGTGGGGTTACAGTGGCCAATGAGACAAACAGAAACTTTTTTGAGTGCCATATTTGAATTAATAGGTGAACCTAATGTTGAACACATTATGGTCTATTCAAATCACATTGCGCTGCACAAACACTTGCTAGATTCGTGCAAGTAAGTTGCATACTAATTCAATGCAAAAGTATAAATAGaacaatgaacaaaatattttaatatctcaaaaaaaaaattaataattttaaagaatttgaaaatagcgttttcactgtatgtcaatggcttttttcttttttcaaatgctttctatttccatatatttatacatgaagttaaaaaaaaatgccattggTCACTACACGCGTAAGAGCAACCTATTATCTTTTGCCTCAAACTCTTGCATTGTAATGGTAATACACACTGTTATTGAACCGTGAGAAAACTATCAGCTTGTTGAGTGTGACATCACATCGCTTGACTATATCAAATAGTATtaggagactcaacaaatggtaataataaacatttacaaagcgatgtaatactttttgAAAATCACAATATGTGCCTAATATTAGTATGCCTAAAAATACTAAATGATTAAAAGTTGCATATGTTTCTTAATCCTTTGACGTTCTCAGCATTGGGTTCAGATCTGTGTTTGACCCCAGAGATATTCATTGTttaatccaggggtgtccaagcttggtcctggagggcctgtgtcctgctaagtttagttccaattGCAATTCCAAGTCCAATTAGATACACCtatgctagctaatcaagctcttactaggtgatCTAAAAactatcttgcctcaacacacctgcaaggatgagcTAAAATcggcagaacactggccctccaagaaggagtttggacactcctgtttTAGTCTTTctaaacagtattattatttctaaattacaaacaaatagACACAGAATTACAAGTAAACCACTTTTtttcaaaaaagagaaaatttatgtttatgttaagaTTAAAGTTACTGTTTAAAAGCAACTTGacttgtattacatttttaggtcaatagGTGGCCGTACtaacaatcaaaaatgtattgctgaataattcttcaaaaatgtttaatctaataatgaaacatgacgtttttttaaagtatgaattcaagttttaaatttgtatatttacttatacatttaaaatatacttaatatatttaaattattttggtttaattaatgacacgtaaaaatactaattaaataaatatacatgtctattaatttgtccaattaaatttgttttattatcattgtactttttttttattattatttgcagagGTCCTGTGGGTCTTTATAAAGTCTTAagtattaaattagatttttacaatttaaggtcataaaaagtcttaaatttgagaggtcttaaattttgcatCAAGGTGTGACATTTCTACTGAATTTCATTCgctgatgtttattttacttgtgCACAATTATTCTTAagccttgtgtgctgttgagAATATTAATTTGGAGACAGATTTCTTTGTTTGAGCTCATGAAAGTGAGACTTTTGCACACATTGTTTTGAAAGttgcttatttacattttttcagacaTATAGTAAACATAggaagtgtatttatgcacacatacacacacacacacacacacactatcatttACTGTTTATACTCCAAAGAACTCAAaaaatataaaagccagaaacttttttgcaCAGGACTATCTAAATGGTTATGCTGTCAACTGatcatcaacagtaaaaatgacaaaatatacatttaccaAAAAGGGAAGATAACCAGCAACAATGCGTGATTACATGCTGTCATGGATTTGCatccaaaaaatgttttaatggaagtcaatggggcaaaaaaaacagcaactaacataaggaaagggtagtaaatttaaataatacagaagGGTTAAGGTGAACAATTGTGACCGGGTATATTGATATACAGTGGGTCCGATCAGAAGGTATTTCCACATTCAAGTGGCCAAATCTGTGGTTTTCAAGCCTTAAACCTTgggtaatattatttaaataatattgctCCTTGACATTATATTTAGTTTTCAACATATTACTGTATTGTTtgcctttcaattattttttccaaaattatttttagttagtCTTAAAAGATCTTAAATTTACCCTGATAAAACCTGAATAAACCCTGTAAATAATTGTGAAGAAGTCGTACTTGCAGAtcatgcacaaatatatatacGCCAATATGCAATCATAAATGATTGTTATAATATTTCACAGGTATCAATGTGGGTGTGGGGAGGGCCGTTaaggttttggttttatttacatttgatttcttctgactttttacaaaatatgtttcaaaaacaatgtctaataatggtttctttttatttaaatatagggCAATCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCGCCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTTCACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTACGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGAAGTGTTAATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGGAAAATTAATTAGCTGTAGGAACTTGTTTTAAAtggtgtgcgcatgtgtgtgtgtgtgtgagagagagagagcatgtgcaTTCTATAAACTTTGTATTTATTCCATTTCATACAACTTGTAGTTGCTCAATTTGTTAATGagttaattttttaagttaattagttgattattttgtgtattggggtgtgtgtgtgtgtcataaggATTGCCGTTTGCTCCAAGACTTCATACAGTTTTCTTTTATGTgttggtttaaattaaatgtgctgTACAAACTGTTTATTGTGTTATGGTGTGCTGCTAAAGCATTTTTTGGCAgtgatttatgttttgttaaaaaaatgcatcttaaaaggtcattaaaatgaattcaaaacaAA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066007 lncRNA upstream 64870 26466861 ~ 26469201 (+) True XLOC_033745
TCONS_00068852 lncRNA upstream 139688 26388429 ~ 26394383 (+) True XLOC_033744
TCONS_00068574 lncRNA upstream 237559 26296277 ~ 26296512 (+) True XLOC_033742
TCONS_00068851 lncRNA upstream 243602 26285655 ~ 26290469 (+) True XLOC_033741
TCONS_00068850 lncRNA upstream 320221 26199414 ~ 26213850 (+) True XLOC_033739
TCONS_00066013 lncRNA downstream 15344 26557767 ~ 26558406 (+) True XLOC_033747
TCONS_00066014 lncRNA downstream 69304 26611727 ~ 26616170 (+) True XLOC_033748
TCONS_00066022 lncRNA downstream 208048 26750471 ~ 26756182 (+) True XLOC_033752
TCONS_00066027 lncRNA downstream 317065 26859488 ~ 26876314 (+) False XLOC_033754
TCONS_00066033 lncRNA downstream 498950 27041373 ~ 27044000 (+) True XLOC_033756
TCONS_00066006 mRNA upstream 60588 26466826 ~ 26473483 (+) False XLOC_033745
TCONS_00066005 mRNA upstream 168651 26326462 ~ 26365420 (+) True XLOC_033743
TCONS_00066004 mRNA upstream 303905 26224211 ~ 26230166 (+) True XLOC_033740
TCONS_00066002 mRNA upstream 352871 26172682 ~ 26181200 (+) False XLOC_033738
TCONS_00066010 mRNA downstream 3079 26545502 ~ 26550895 (+) False XLOC_033747
TCONS_00066011 mRNA downstream 3488 26545911 ~ 26564784 (+) False XLOC_033747
TCONS_00066012 mRNA downstream 7423 26549846 ~ 26551173 (+) False XLOC_033747
TCONS_00066015 mRNA downstream 86661 26629084 ~ 26634061 (+) False XLOC_033749
TCONS_00066016 mRNA downstream 86703 26629126 ~ 26632462 (+) True XLOC_033749
TCONS_00065996 other upstream 413335 26120631 ~ 26120736 (+) True XLOC_033735
TCONS_00065993 other upstream 462563 26071426 ~ 26071508 (+) True XLOC_033733
TCONS_00065992 other upstream 463064 26070874 ~ 26071007 (+) True XLOC_033732
TCONS_00065985 other upstream 505298 26028659 ~ 26028773 (+) True XLOC_033727
TCONS_00065983 other upstream 549232 25973649 ~ 25984839 (+) True XLOC_033725
TCONS_00066028 other downstream 345987 26888410 ~ 26892142 (+) True XLOC_033754
TCONS_00066032 other downstream 498941 27041364 ~ 27044003 (+) False XLOC_033756
TCONS_00066034 other downstream 501292 27043715 ~ 27043842 (+) True XLOC_033757
TCONS_00066036 other downstream 516971 27059394 ~ 27136646 (+) False XLOC_033759
TCONS_00066050 other downstream 912917 27455340 ~ 27660728 (+) False XLOC_033761

Expression Profile

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