RNA id: XM_039805867.1


Basic Information

Item Value
RNA id XM_039805867.1
length 1633
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC120562245
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 5800384 ~ 5865827 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTCCGAGAGTTGGTaactggtaaaagagttgtctgtacactctgtcaaacttctcttggaaacacacaggagttgttcaagATGTACGGAGCGGTTCTTTTTTCTCCTCCATGTCACCTCAGGAGCTCTGTAATGATGCGCccacagaaaaggaaaagacaatactaacctTGCCTCATAACGAGGCCGTGACCCATATTTGCTCGGTGCTATGTCTGCAAGTCCAGAGTTACATGATgctgataatgacgccattgtgtGAAATGTGATGTAGATATGGATTGGGAGCCAGCAACATCTGCACTAGTGAGCAAGTGGCCACATGGAGTGGAGCAGCAGGACAGTTCATCAGGTGAGGAGCTTCCTTTTCCACAGAACAGCAGGAGACCAAGAGGTAGAGGACGAGGTAGAGGAAAATGGAGAGGCGTGGAGCGGCAGGACAGTTCATCAGGTGAGGAGCCTCATCTCCCCAGAACAGCAGGAGACAAAGAGGTAGAGTACGAGGAAAAGGGAGAGGCTGCAGTCAAGCCAGATCAACCAGCCCATCTGAAGAGAGGTGGAATGATGTTGACGTTCCAGACATCACACCACCATAGCCCACCTTCAGAACCCAGAAATGTCCCAGGACCCCAGCTCATACGTAGTGCTACGTACACAGCCGTGCAGTTGTTTCAACTCTTTTTTACCAACTCTGTTTTGAAGACAATACTTGAAAACACCAACAACTGTGGCTCAACACATCATTCAACACCCTCTATCCCGTGGATTGATTTGAAATTGCAGGACATGTTTGCATTCATGTCTTTAGTTGTTTACATGGGTGTAGTCAAATGCTTTTCTTTCACTGATTACTGGCGTGGGGGTCATCTTTATAGCTTGCTGTTCCCGAGACGGGTAATAACTGGTAAAAAGTTCCTCAGGATCTCCCAGTCCCTTCACCTCAGCAGCTCCGTGGGGGATGCTGCTAATGATGAAAGGAGAGGCACAGGAGCCTACGACCATCTGGGTAAGATAAAGCCGCTCTACGAGGAGATGAGGGACTCCTGTAGAAGAAACTATCACCCTGGCCAGGAAATCACCATTGATGAGTGAATGGTTGCTTCAAAAGCCCGCACTGGTCTGAAACAATATATGAAAAACTATGTGAAAAAATATGGGTTATAAACTCTTTGTTCTGGCAGACTCCAGGAACGGTTATACATGGGACTTTTTTGTTTATGAGGGAAAATGCCAGGGAAACAGTGGTAAGGGACTCAGTTATGAGGCAGTGATGGAGCTAATTGATGAACAGTTGCTGGGCATAAGGTCTTTGTGGACAATTTTTATACAAGTCCAATCCTGTTTCGTGACCTCCTTCTGAAGAGGATTTGGGCATGCGGAACCATCCGCACAAACAGAATCGGATTCccaaggtcaaaggtcaacattCTGGTCTCAAAATCTCCCCGTGGCAGCATATGCTGGATCAGGAATAACTCCCTGCTCTTTGTTCAGTGGCGAGACACAAGGGATGTTTTTCTGTGCTCAACTCTCCACAGGGCCCACGCAGAGGACACAGTGCAGAGGAGGGTCAAAGGTGCAGATGGGCAGTGGCAGTTGAAGGACGTCTCAGTTCCACTAGTGGTGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94811 lncRNA downstream 42596 5757548 ~ 5757788 (-) True G70872
TU94809 lncRNA downstream 42977 5757079 ~ 5757407 (-) True G70870
TU94808 lncRNA downstream 45837 5754154 ~ 5754547 (-) True G70869
TU94805 lncRNA downstream 56772 5743282 ~ 5743612 (-) True G70866
TU94783 lncRNA downstream 247788 5552258 ~ 5552596 (-) True G70852
TU94830 lncRNA upstream 43810 5909637 ~ 5909941 (-) True G70889
TU94831 lncRNA upstream 60595 5926422 ~ 5926757 (-) True G70890
TU94833 lncRNA upstream 65412 5931239 ~ 5931778 (-) True G70892
TU94838 lncRNA upstream 121223 5987050 ~ 5987340 (-) True G70897
TU94840 lncRNA upstream 134967 6000794 ~ 6001094 (-) True G70899
XM_039806020.1 mRNA downstream 536028 5263433 ~ 5264356 (-) True LOC120562331
XM_039805187.1 mRNA downstream 598126 5200501 ~ 5202258 (-) True LOC120561869
XM_039806021.1 mRNA downstream 644056 5106812 ~ 5156328 (-) True LOC120562332
XM_039806810.1 mRNA downstream 888456 4902496 ~ 4911928 (-) True fam210aa
XM_039805873.1 mRNA downstream 1187833 4611385 ~ 4612551 (-) True LOC120562255
XM_039805661.1 mRNA upstream 427884 6293711 ~ 6509543 (-) False adgrb1a
XM_039805658.1 mRNA upstream 427884 6293711 ~ 6509543 (-) False adgrb1a
XM_039805650.1 mRNA upstream 427884 6293711 ~ 6509543 (-) False adgrb1a
XM_039805660.1 mRNA upstream 427884 6293711 ~ 6509543 (-) False adgrb1a
XM_039805651.1 mRNA upstream 427884 6293711 ~ 6509543 (-) False adgrb1a
XR_005639743.1 other downstream 644054 5155932 ~ 5156330 (-) False LOC120562332
XR_005639742.1 other downstream 1355331 4411134 ~ 4445053 (-) False cep76
XR_005639741.1 other downstream 1355331 4411134 ~ 4445053 (-) False cep76
TU94371 other downstream 1722605 4072324 ~ 4077779 (-) False eny2
TU95121 other upstream 1631236 7497063 ~ 7500153 (-) True G71108
XR_005639915.1 other upstream 1709538 7575365 ~ 7609859 (-) False enpp2
TU95317 other upstream 1930346 7796173 ~ 7807092 (-) True G71261
TU95328 other upstream 2040973 7906800 ~ 7909302 (-) True G71269
TU95337 other upstream 2173498 8039325 ~ 8041777 (-) True G71278

Expression Profile