RNA id: XM_039806810.1


Basic Information

Item Value
RNA id XM_039806810.1
length 2341
RNA type mRNA
GC content 0.42
exon number 5
gene id fam210aa
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 4902496 ~ 4911928 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGGACCAATGCGAACTACATTTCCCGTAGCTTTCTGCGCGGTTGGGGTTACGTATGCTGGTCTCTTCACGCAGTCTATGATGCGGCAGCGATAAATGTGGTCATTGAACGATGCTAGCCCAGGCACATTTGCATGGCCATCAGGATTAAGCGGTGCTGCTTGCATTAATGAATGTGCAATCATAACACAAGCCTGTGGTTAAACGTCACAGCAGCACAGAGGAGGTGTGGAGGAGTAGAGGATGATAATGCAGCGCTTCCTAACTCATGGTGCACGGCGTATGGCAGCTGCACGCCCATTACTGGTGGGTGTCACCATCCCTGAACCACCAGTAGCATTTTGTTGCTGTGTCCTCCGTCTGTCACTACCACCATCGACAGGCCGACACTGGCTGTCAACCTCAGCCTCAAGCAAGGCAGCACATCAGCCAAAACACGAGCCACCACAGGAGGAACCACAGTCAAGCTCAAAACCTCAAGCACAGGAGATCCAGAAAGGGGAAGCTGGGCCTGATGCTGTCGAGGTGGATCCCCTGCAGGACAAGTCCACCGGTCTGGTCCAGAGGTTTAAGAGGACCTTCAAACAGTATGGGAAGGTGATGATCCCTGTACATCTCATGACGTCCTCAGTCTGGTTTGGAACCTTCTATTACGCTGCTATGAAAGGTGTGAATGTAGTGCCCTTCCTGGAGATGATTGGTCTACCTGAGTCACTAGTTGGCCTTTTGAGAGACTCTTCGAGTGGTTACGCTCTGACTGCGTATGCCATGTACAAGATTGCAACCCCTGCAAGATATACGGCAACTCTGGGCGGCACATCACTATCTGTTCAGTATCTCCGCAAGCATGGCTACTTATCAACACCACCACCGGTTAAAGAATACATCCAGGACAAAATGGAGGAGACCAAGGAGAAACTGACAGAAAAGATGGAGGAGAcaaaggagagattttcagagaaaatggaggaaacAAAAGAACGTTTCTCTGAGAAAATGGAAGAGACTAAGGACAAGCTTTCTGAAAAATTGCAGGAAACCAAAGATAGAGTTTCAGAGGGAAAAGCGTTTTTTAGAAAGAAAAGTGATTAGGGAAAACCATTTACAGATGACTCCTCTGAATAAATTATCCTATTTTGATCCAAACAAATAATCAGTAAGCTTGGGGGAAATAACAGACTGCACTTGTGAGACTGTGCACAAAGACGAGACAGAGTTTGTACTATCCTTGTCCTAAAGTTTCACCTCACACATCTCAGTTATCAGTTGTCTATTTACGTGTCAAATTCTGTCCTTGTCCAGACTCTGCCACGATGCACTGTAAAtgtagaccagtggttcccaacctttttggtctgAGGTACCCCTACAGCCCTGTTGGAGGGCTGTGTAATTTTATCATACAAGTAAActctattattataatattaaggttggtttggtcagcaatcATGCTACAAATAGCCTACTAAGCTACTACTTTTACTACTACTTCGGTTAGCTGAAAGTAATACATTAGTATTACTTTCAGCTAACTATTTTAACCTATTCTCCATTAATTTTAGCTACCTGTTCAAACTTCTGTGCTAGCTTGCAAACAAGTTTTCACACACTCTTACATAATTGCAACACAGTGTTCAGGTGTTAACTTAATGCTAATATGTTGATGTTTTCTTTGAatcaaatcatttcaaattagTTGAGCTACTCTCCAATCTTTCCATGTACTCCCTGGAAACTGCAGAAGTACTCCTGGTTGGGAATCATGCAGCTTAACCGGATCTTGGTAATTCTTCATTCTTATCTCAGACTGGATTTCCACAGCCTCAAGTGATCTGGACTGTAAAAATTAGAGAAGCTGTGTTCTtatttctctttacataaatttatgtaaagagaaataAGAACACAGCTTCTCTAATTTTcataagggggaaaaaagaggtCTGGGCTacaaagggttaaaaaaaaatctatatatatatatacatacatacatacatacatacatacatacatacatacatacatacatacataacagaGTAACCACGCTCATGGGATCCTGTGTGTACTAGTCCATCAAAGCCTTTCTGGAAGGCTGGGTATCACCTTGTTTTTTCTAATGTAATGCAAAAGAAAGGTTTTTAATTTTATCCTATAGCTCAAGCTAATATTACATTATGTACTGACTGAAAGTTGTGCATCAACGTGTAAACATGCAGCGGGAACAGCAACAGTAGATAAAAATGTCTTGGGTACTTCTGTACTAAATACACAAATGTAATTCAAATGGATGTCTGGTTAAAATCACAACTGAATAAAGTGAAATGCTAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94607 lncRNA downstream 2571 4899637 ~ 4899925 (-) True G70696
TU94606 lncRNA downstream 4612 4897532 ~ 4897884 (-) True G70695
TU94604 lncRNA downstream 4998 4894939 ~ 4897498 (-) True G70693
TU94605 lncRNA downstream 8951 4892857 ~ 4893545 (-) True G70694
TU94603 lncRNA downstream 25479 4876742 ~ 4877017 (-) True G70692
TU94645 lncRNA upstream 26771 4938699 ~ 4940071 (-) True LOC120562923
XR_005639876.1 lncRNA upstream 26804 4938732 ~ 4959999 (-) False LOC120562923
XR_005639877.1 lncRNA upstream 26804 4938732 ~ 4951526 (-) False LOC120562923
XR_005639875.1 lncRNA upstream 26804 4938732 ~ 4940056 (-) False LOC120562923
XR_005639874.1 lncRNA upstream 44372 4956300 ~ 4957100 (-) True LOC120562922
XM_039805873.1 mRNA downstream 289945 4611385 ~ 4612551 (-) True LOC120562255
XM_039806963.1 mRNA downstream 439865 4445782 ~ 4462631 (-) False ptpn2a
XM_039806962.1 mRNA downstream 439866 4445782 ~ 4462630 (-) True ptpn2a
XM_039806019.1 mRNA downstream 457443 4361995 ~ 4445053 (-) False cep76
XM_039806018.1 mRNA downstream 457444 4410849 ~ 4445052 (-) True cep76
XM_039806021.1 mRNA upstream 194884 5106812 ~ 5156328 (-) True LOC120562332
XM_039805187.1 mRNA upstream 288573 5200501 ~ 5202258 (-) True LOC120561869
XM_039806020.1 mRNA upstream 351505 5263433 ~ 5264356 (-) True LOC120562331
XM_039805867.1 mRNA upstream 888456 5800384 ~ 5865827 (-) True LOC120562245
XM_039805866.1 mRNA upstream 888456 5800384 ~ 5801912 (-) False LOC120562245
XR_005639742.1 other downstream 457443 4411134 ~ 4445053 (-) False cep76
XR_005639741.1 other downstream 457443 4411134 ~ 4445053 (-) False cep76
TU94370 other downstream 824717 4072324 ~ 4077779 (-) True eny2
XR_005639743.1 other upstream 244004 5155932 ~ 5156330 (-) False LOC120562332
XR_005639715.1 other upstream 904317 5816245 ~ 5817189 (-) False LOC120562243
TU95121 other upstream 2585135 7497063 ~ 7500153 (-) True G71108
XR_005639915.1 other upstream 2663437 7575365 ~ 7609859 (-) False enpp2
TU95317 other upstream 2884245 7796173 ~ 7807092 (-) True G71261

Expression Profile