RNA id: XM_039806962.1


Basic Information

Item Value
RNA id XM_039806962.1
length 3036
RNA type mRNA
GC content 0.44
exon number 9
gene id ptpn2a
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 4445782 ~ 4462631 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGCGTGCAGGCGTGCATGCAGTATTGTGCCGGAGAAGCAGACTCCCCGCAGGGATCCCCAGGGTTACACACACTGCTGTTTAGCTAGATGGCTGACAGAAAGGAGTAACTTAGTGAACGGTGCCACAAACGCTCTGTGATCATCCAGCAATTGTCTCAGGGCATTAATTACGATATAATGGAGCAAGAATTTGAAGACATTGATTCGTCTGGGAAATGGCAAAACCTTTACAATGAAATCCGTAACCAAGCCAGTGACTATCCTTACAAGGTGGCAAAACTTCCAGCGAATCGGAATTTGAACCGCTACAGAGATGTCAGCCCATATGATCACAGTCGGGTAAAACTTGAAAACTCCGAAAATGACTACATCAATGCAAGTTTAGTCATGGTGGAAGAAGCCCAAAGAGCTTACATTCTTTCTCAGGGGCCATTGAGGAATACCTGTGGTCATTTCTGGCTGATGATTTGGGAGCAGTGTTCCAAAGCTGTTATAATGCTCAACAGAATCATTGAAAAGGGATCTGAAAAGTGTGCACAGTACTGGCCCACCACAGAGGAGCTACAGATGTCTTTCACAGACACAGGGTTTGTTGTCAGATTACTTTCAGAGGAGGACCAATCCTATTACACGATCCGAGTGCTAGAACTGCAAAACACAATGACGGGGGAGTCAAGGGAGATCTACCACTTTCACTACACCACATGGCCTGACTTTGGTGTCCCAGAATCTCCAGCCTCCTTCCTCAACTTCCTCTTCAAGGTTCGGGAGTCTGGTTCGTTGGGACCGGAGCACGGGCCCGCAGTGGTGCACTGCAGTGCTGGGATTGGCCGATCAGGGACCCTCGCCTTGGTGGACACCTGTCTGGTCCTGATGGACAGGAGGAGGGACCCATCATCAGTGGACATACAAAAGGTGCTACTGGACATGAGGGAATACCGCATGGGCCTGATCCAGACCCCTGACCAGCTCCGCTTCTCCTACATGGCTGTCATCGAGGGAGCCAAGCTCATCCTAACAGACAAGTCAACAACCCAGCAGAACAAGCAGAGAGTGATGTCCAGAGCTCCATTGGAGCCAGATCTGCACCCTCCACCCCCTCCACCTAGACCTCACCTCAACGACAGCAGGCCCAACGGTCAGCCAGGACCCTGTCTGGAGCCACAGGCCGCCTCAGGAGACCACCTGCCGGCACGAGACCACCTGCCGGCAGAAGAGACAGACATCCAAGACCACAACATGACAGAAAACTCGGGGTATGTCAGAAAGCGACACCGTGAGGAGAGGATTGCCAGCACCTCACAGAAGGTCCAGCAGATGAAACAGAGACTGACCGACTCGGAGAGGAAACGAGACAACTGGCTATATTGGAGACCCATTCTGCTCAACGTCGgtgcaggggcagctgtggctGTCGGCCTGATGCTGTGCTGGATGTACTCCCAGTGAAACACTTTGGGTCACTTAAAGCTGACTCCTATTTTGCACCAGTACCTGGCATTAGGTACTTCTCTAAGTAGATGTAGATGGTAATATGTGCATAACTGAGGgtatttatttcttaaggtcAAAATGCGGGAGCGCTAGATCAAATGATTGTGTGTATATTTTTCATGTAAGATCTTAACAAAAATAGAAACATctcaggatcttggtgccagcACGATGATTtcatttcctttccttcttGTCACTGTTGATGAATGTACTGTACCATAGCAAATCGCTTGGAAAGAAAACTTACTAAAGGTGCAGtacaaagcaaaaaaataattctGACAAGTTGGGTTTTTTGCATTCTTTATTTGTAGTGGTGAGATGTGTGTTGGTCATCTGTggacacattttacattttgcatttcAAAATGATGTTTTGAAAGTGTCGACTGTCCATCCTACCATAGATATGTAGAAAGACTTCAAAGCCTAGAGGTCAGCTAtgtgagtttttgtttttctgtaatgaaatgtgcatgcatgcatttagAGGTTTTCCAGAGCACCACTTGTTCTTCCATTCACATTTAGCAGGGGCATCCCAATACGGccagatatatatttttgtgtgaCTGGACACTTTATGGGGGAGCTGCCTTGCTGATGTTTTTAACTTTGCTAgaatgttaacattttattttctattataTGAGCACCTTTTTTCATAGGTTTTGGTTGTCACATGGATTATACAAGATGACAGGTCCCTCGCCGCTTAGTGCGTGTATTTACCCACTGGATGGGttcgtgtgtgtatgttcagGTTGTTCCACTGTTGTTTTTGAGGAAACCAAAGCAAAGCTGTCCGTTTTTGGAAAGTAACAGCCAGGCAAGCTATTAAATAAAATTGTGGAATGTATTTTCCGTTGTATCTCTGACATAACTGACAACTGCATTACAAAATGATAGACATAGTAGCTTTGCATTGCGTTTGACTTTTTAATTTGATCCCATAGAATTACTAAATTGGTTTTAAAGTGACTGGGACCAATCCAAAACTATAATAGTGCAATTTAGAAGTTGGAGCAAAGCACCTTGGATTAAATTCTAGTTAGGAGAGAGTGATAGCATACACGTAAGTACCTATTTGTTTGCTGGTTGAGATAGCTTTTAATGTGCCTTGAAGTGAATTAAATGGAAAAATGTATGCTCCAAGGTTTCCTAGCATAATCAGTACAGATAAAAGTGTATGTGATCTGCTGTTTCCCACAATACATGAGTAGCATGTTAGCACTGCATTGACCGGTTTGTATCAGAGTTGTCATTAGCGTGTACTGACTCCTGAGAGGAAATGGTGGGTTGCTGATTGGCTTAGATCCCACCGTTGGATATTGCTATTACGCCGTTCTCTTTTAACCCAGAAGAGACACGTTTGATCATAACATTCCATTTATTCTTGTTTTCCACATAAAATTTCAGGAGAGTTTTGTACACTGCTGAGCTGCAGTGAGAACATGACCGATGGCATTTTGAAAAAGAAGCAAACAAAACCATGAAatacttcttaaaataaaacattcatcTTTTTTTACCAAA

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18026 PTPN2, PTPT; tyrosine-protein phosphatase non-receptor type 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94471 lncRNA downstream 12008 4432496 ~ 4433774 (-) False LOC120562328
TU94468 lncRNA downstream 36739 4408840 ~ 4409043 (-) True G70572
TU94430 lncRNA downstream 86964 4357980 ~ 4358818 (-) True G70538
TU94422 lncRNA downstream 147675 4297761 ~ 4298107 (-) True G70530
XR_005639873.1 lncRNA downstream 159139 4286172 ~ 4286643 (-) True LOC120562918
TU94514 lncRNA upstream 54502 4517132 ~ 4518554 (-) True G70613
XR_005639724.1 lncRNA upstream 151194 4613824 ~ 4615309 (-) True LOC120562256
XR_005639728.1 lncRNA upstream 204609 4667239 ~ 4668215 (-) True LOC120562259
TU94564 lncRNA upstream 204651 4667281 ~ 4667661 (-) False LOC120562259
TU94580 lncRNA upstream 261487 4724117 ~ 4724379 (-) True G70669
XM_039806019.1 mRNA downstream 729 4361995 ~ 4445053 (-) False cep76
XM_039806018.1 mRNA downstream 730 4410849 ~ 4445052 (-) True cep76
XM_039806017.1 mRNA downstream 10813 4426306 ~ 4434969 (-) True LOC120562328
XM_039807104.1 mRNA downstream 234338 4207531 ~ 4211444 (-) True id4
XM_039807356.1 mRNA downstream 368055 4073327 ~ 4077727 (-) False eny2
XM_039805873.1 mRNA upstream 148755 4611385 ~ 4612551 (-) True LOC120562255
XM_039806810.1 mRNA upstream 439866 4902496 ~ 4911928 (-) True fam210aa
XM_039806021.1 mRNA upstream 644182 5106812 ~ 5156328 (-) True LOC120562332
XM_039805187.1 mRNA upstream 737871 5200501 ~ 5202258 (-) True LOC120561869
XM_039806020.1 mRNA upstream 800803 5263433 ~ 5264356 (-) True LOC120562331
XR_005639742.1 other downstream 729 4411134 ~ 4445053 (-) False cep76
XR_005639741.1 other downstream 729 4411134 ~ 4445053 (-) False cep76
TU94370 other downstream 368003 4072324 ~ 4077779 (-) True eny2
XR_005639743.1 other upstream 693302 5155932 ~ 5156330 (-) False LOC120562332
XR_005639715.1 other upstream 1353615 5816245 ~ 5817189 (-) False LOC120562243
TU95121 other upstream 3034433 7497063 ~ 7500153 (-) True G71108
XR_005639915.1 other upstream 3112735 7575365 ~ 7609859 (-) False enpp2
TU95317 other upstream 3333543 7796173 ~ 7807092 (-) True G71261

Expression Profile