RNA id: XM_039805873.1



Basic Information


Item Value
RNA id XM_039805873.1
length 1167
RNA type mRNA
GC content 0.51
exon number 1
gene id LOC120562255
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 4611385 ~ 4612551 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCCAAGCGCAACTGCAGATGGCTGAATGGAACTGGACTGGCTGGGAACCAGGCCAGCAGTTGCCACAATGACACTCCCCAGCAGAGCAACAGGACCCAGGGACCACGGCAGATCCCATGGTGTCCATGAGAGTAGAAGGAACTGTTCAGCCCTTCTTAGTTGACACAGGAGCTACTTGCTCAACAATCAGACATTGTCCATCACAACACATTTCACCAAGTCACATTACGGTGATGGGTTTCTCTGGGGAAAAGCAAAAACTGCCAATAACAAAACCACTGCATACAGCTATAGGGAACCAATGCGTCCTCCATCCATATGTTGTTTCTCCCACGGTTCCTATGAACCTCCTTGGCAGAGATCTCCTCATAAAACTGGGCGTGTCTATCCTGTGTTGTGCTGATGGAATATTACTGACTTTCCCTGACGGCCGTCAAATGACCTGTTCTGAAGGAAACCAGGGCCACGGACAATACATCCTTTCCCCCACCTCTGACTCCTATGCTGACATTTACTGGGCTATGTTGTCTCCAGAAGGCCCGGGCTCCGGGGGCATCCTGAAACAGTTCTTCCTCTGGAAGCCCTGGATCTCGCAAGTTGCACCCTTTGTCCCTCCCCCAGATCCCCCACATGTCACCCTAAATTATGATGTCCACTCTGATCTCTGTTATCAAGACGCTTTTGACACGATAGCGGACACCAGATGGGACATCCACTCTCAAAACATCTTTGTGGGACCTGAAGGCGTAGCCGCCGCGGTCCAGCTAACCCCTGATCAGTTGCCATGGTTTGTTATGACTGAGGAATCTGCCCCACATGTTTCACTTGCCCTGCACCCAGGGTATGAGGCCAAATCATTAGGTCCCATGGTCAAGACAGCCCTGACTGCCACCGACTGGACACTCACTCCTCTCCCCAAGGTTCAATACTCTCCCTCCACCAAAACCTTCCGCATTCTGTGAGGGTTGAGACACAGCTTTTCTCCAACATGACTTAATTGCTAGGCACCATGGTAGGGAAAGGACTGACCATCAAGATGCTAAAGCCATGTTAGATGGTCTTCCCACCACTCTCTGGTCACAAACACCGACTGATGTAGGTTTAGTGCATTGTGCCCCGCTGAAAGGTCAGCGGGGCACAATGCACTAAACCTACATCAGTAGGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94514 lncRNA downstream 92831 4517132 ~ 4518554 (-) True G70613
TU94471 lncRNA downstream 177611 4432496 ~ 4433774 (-) False LOC120562328
TU94468 lncRNA downstream 202342 4408840 ~ 4409043 (-) True G70572
TU94430 lncRNA downstream 252567 4357980 ~ 4358818 (-) True G70538
TU94422 lncRNA downstream 313278 4297761 ~ 4298107 (-) True G70530
XR_005639724.1 lncRNA upstream 1273 4613824 ~ 4615309 (-) True LOC120562256
XR_005639728.1 lncRNA upstream 54688 4667239 ~ 4668215 (-) True LOC120562259
TU94564 lncRNA upstream 54730 4667281 ~ 4667661 (-) False LOC120562259
TU94580 lncRNA upstream 111566 4724117 ~ 4724379 (-) True G70669
TU94582 lncRNA upstream 122226 4734777 ~ 4734979 (-) True G70671
XM_039806963.1 mRNA downstream 148754 4445782 ~ 4462631 (-) False ptpn2a
XM_039806962.1 mRNA downstream 148755 4445782 ~ 4462630 (-) True ptpn2a
XM_039806019.1 mRNA downstream 166332 4361995 ~ 4445053 (-) False cep76
XM_039806018.1 mRNA downstream 166333 4410849 ~ 4445052 (-) True cep76
XM_039806017.1 mRNA downstream 176416 4426306 ~ 4434969 (-) True LOC120562328
XM_039806810.1 mRNA upstream 289945 4902496 ~ 4911928 (-) True fam210aa
XM_039806021.1 mRNA upstream 494261 5106812 ~ 5156328 (-) True LOC120562332
XM_039805187.1 mRNA upstream 587950 5200501 ~ 5202258 (-) True LOC120561869
XM_039806020.1 mRNA upstream 650882 5263433 ~ 5264356 (-) True LOC120562331
XM_039805867.1 mRNA upstream 1187833 5800384 ~ 5865827 (-) True LOC120562245
XR_005639742.1 other downstream 166332 4411134 ~ 4445053 (-) False cep76
XR_005639741.1 other downstream 166332 4411134 ~ 4445053 (-) False cep76
TU94370 other downstream 533606 4072324 ~ 4077779 (-) True eny2
XR_005639743.1 other upstream 543381 5155932 ~ 5156330 (-) False LOC120562332
XR_005639715.1 other upstream 1203694 5816245 ~ 5817189 (-) False LOC120562243
TU95121 other upstream 2884512 7497063 ~ 7500153 (-) True G71108
XR_005639915.1 other upstream 2962814 7575365 ~ 7609859 (-) False enpp2
TU95317 other upstream 3183622 7796173 ~ 7807092 (-) True G71261

Expression Profile