RNA id: XM_039806020.1


Basic Information

Item Value
RNA id XM_039806020.1
length 924
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC120562331
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 5263433 ~ 5264356 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCAGGCTTAAGAGAAACCAGACAGGATTCGAGAAGACCAACGATTACACCGCTACACGGCAATCTCATTGAACCACTTTGGCAATAACTGTCTGTAAGCCCTGGACCAACAATCACTGTCTGAAAAAAACACCTACAGAATAAAATCGGTTGCATGTCCTGTGTGTAAACagccacagagagacagatgcaACCACATCACTATATAATATGACTAAACTGTGCTGAATCCACCAACCAGCACGCCATCTTGGCCAACTATGAACGCTACCACAGCAAATCAGTCGGACTGCCTCGAGATGAAGGTCCCAGTTCCTCTCTTCTTCATTATCGGTGTGGTAAGCCTGGCAGAGAACCTGCTGGTTGTGGTGGCCGTCATACGAAACAGGAACCTCCACTCACCCATGTACTGCTTCATCTGCAGCCTGGCAGCCTTTAACACCATTGCCAGCCTCACCAAAACCTGGGAGAACCTAATGATTGTGTTTGCCAATGTGGGACAGCTGGAGAAGAAAGGTTTCTCTGAGAAGAACCTGGACGATGTGATGGACTCCCTGCTGTGTATGTCATTTATGGGCTCCATTTTCAGTTTCCTGGCTATTGCTGTTGACCGGTATGTATGTATAGCTTGGATTCGCACACACAAATGTTTTAGATGAAcgttttacagcattttttataCCACATATTTGACAGTATGAGGGATGAATTGGAATCTGTGATAATATTAATGTGTTCCATCCCAGCCCACTAATCCACCAGAATCCCCATGAACAAAAGCATCATGATGCTTTAAGATATTTAGTTCCATTTtaattcaaatttaaaaatggCTTACTGTAGGCAGTAAAACAAAGTTGATGTTATGTGTTTACATCCTAGACTCCTCCAGGCACAtgtgtgtccttgagcaagacactgaa

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004978 corticotropin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94707 lncRNA downstream 16538 5246455 ~ 5246895 (-) True G70785
TU94677 lncRNA downstream 98324 5150591 ~ 5165109 (-) True G70759
TU94673 lncRNA downstream 120933 5142076 ~ 5142500 (-) True G70755
TU94671 lncRNA downstream 153600 5109585 ~ 5109833 (-) True G70753
TU94670 lncRNA downstream 171242 5091903 ~ 5092191 (-) True G70752
TU94725 lncRNA upstream 33299 5297655 ~ 5299308 (-) False G70803
TU94726 lncRNA upstream 33399 5297755 ~ 5307035 (-) True G70803
TU94727 lncRNA upstream 42917 5307273 ~ 5307762 (-) True G70804
TU94729 lncRNA upstream 44566 5308922 ~ 5309526 (-) True G70806
TU94730 lncRNA upstream 46389 5310745 ~ 5310994 (-) True G70807
XM_039805187.1 mRNA downstream 61175 5200501 ~ 5202258 (-) True LOC120561869
XM_039806021.1 mRNA downstream 107105 5106812 ~ 5156328 (-) True LOC120562332
XM_039806810.1 mRNA downstream 351505 4902496 ~ 4911928 (-) True fam210aa
XM_039805873.1 mRNA downstream 650882 4611385 ~ 4612551 (-) True LOC120562255
XM_039806963.1 mRNA downstream 800802 4445782 ~ 4462631 (-) False ptpn2a
XM_039805867.1 mRNA upstream 536028 5800384 ~ 5865827 (-) True LOC120562245
XM_039805866.1 mRNA upstream 536028 5800384 ~ 5801912 (-) False LOC120562245
XM_039805868.1 mRNA upstream 536028 5800384 ~ 5801904 (-) False LOC120562245
XM_039805858.1 mRNA upstream 550865 5815221 ~ 5817189 (-) True LOC120562243
XM_039805661.1 mRNA upstream 1029355 6293711 ~ 6509543 (-) False adgrb1a
XR_005639743.1 other downstream 107103 5155932 ~ 5156330 (-) False LOC120562332
XR_005639742.1 other downstream 818380 4411134 ~ 4445053 (-) False cep76
XR_005639741.1 other downstream 818380 4411134 ~ 4445053 (-) False cep76
TU94371 other downstream 1185654 4072324 ~ 4077779 (-) False eny2
XR_005639715.1 other upstream 551889 5816245 ~ 5817189 (-) False LOC120562243
TU95121 other upstream 2232707 7497063 ~ 7500153 (-) True G71108
XR_005639915.1 other upstream 2311009 7575365 ~ 7609859 (-) False enpp2
TU95317 other upstream 2531817 7796173 ~ 7807092 (-) True G71261
TU95328 other upstream 2642444 7906800 ~ 7909302 (-) True G71269

Expression Profile