RNA id: XM_039805187.1


Basic Information

Item Value
RNA id XM_039805187.1
length 1758
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC120561869
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 5200501 ~ 5202258 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTTTACTTTTCTACAGAAACAACTcttccaaatatgacaaaatcCCCCGCAAAGTTCTTACCCCAGGATCTCCTGCTGTCTACCAGCTGAAACCAAAGAAAGAGAAGATTGGAACTCTGACAAGAATGACTCTTGGtgaaaaaaatccaaacaagaaaaacaaaaccatcTTACTTGTTGGTGAAACAGGAGCAGGAAAATCTACTCTGATCAACGCTCTGGTCAACTACGCCATGGGAGTGGAGTGGGAGGATGATGTCTGGTTTCAGATCgtagaggagaagaagagaagtcAATCAGAAAGTCAGACATCAGATGTGATCGTGTACCAGATCTTTGGTTTTGAAGATAAAACTCTGCCCTACTCTCTGACCATCATCGATACTCCTGGATATGGAAGCACTGGTGGGATCGAACATGACATGAACATCATGGAAAGATTATTTGACTTGTTCCAGTCAGAGGATGGAGTTCATGAGATTAATGCAGTGGGTCTGGTGATGAAAGGGAGTGACAATCGACTGAATGACCGACTGAGGTACATCTTTGATTCAGTGATCTCTCTGTTTGGAAAAGACATAGAGAAGAACATTGTCGccctcatcacacactcagatGGTGTGGCAGCTGAAAATGTTCTGGAAGCTCTTGATGCTACAAACATTAAATGTGCCAAAGATGAAGATGCAGAGCCTGTTCATTTTATGTTCAACAACCGCCAGAAAACACTGAAAACTAAGAAAAATAACGCTGCTCTAAATAGTGCATGGGTCTTAACAATAGACCAAATACGTCTATTCACTAATTTCCTGAATACAAATTCCCCTCAGAACCTGATAACAACTGTTGAAGTGCTACATTCACAAATCAGACTGACAGCCTGCatcaacaacctgcaggagagAATCAAATTGATTGATCTAAAACAGACAGAAATCCAACAGACTCAGGATGGTCTGAAAAACAATGAGAAGTTCACTGTAGAAGTTGATGAGCCCTACAGAGTTAAACAAAAAGTCGACCGAGAGTGGAGGTGGTGGGCACTTGGGTTAAATTATGGAGGAGCTGTCTGCTGTACTGTCTGTAAGGAGAACTGTCACTACCCATGCACACTGGCCTGGTATCCAGAACACTGTGTGATCATGAATGATGGCTGCTGCACTGTATGTACCGGGAAGTGTCCTGCATCAGTTCATGTGAAGGAAGAACAATGCATTGACTGTGAGGGTATATGTTCAGATGAATCAAGTCATGTCAAACACCCCTGGATCTATGTGACCAAGACAAGGAAAGTTCAGAAGACCACGCAAGATGTGAAGGAAAAAGCAGGAAGCACTTTGAAAACTCTTAAAAAAATCATGGAAGAACTTCAGCAAGACAAAGATCAGTGGTTGGAAGAGTCCTTTCAGCATGTTGTCAATCTGGAGGAGATGGCCCTGAATGTTAATTCACTGTCCATTCATGACCACTTGGCTTTCCTGATTGAGAAGATGAAGGAGAAAGGAGACACAGGGAAGGTACAGAGACTGAAAGAGATATTAAGTAAAATAGCTAAAAGTAAAGGATTCAAAGCACTGGTGCGATACGGGTTTAATAAACTTGCAGCAGCAGTTGAAACTGTGATGAACTAGATGATCACTGAGATCAGACAGCTGTGTAGAAAACGAGGTGTACACTGATTATCAAATGTGTTTCATTAAGGTTTCATTAATGTGTTATTAATGAAAACAGAGCCCTCTGTAATGACTGTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94677 lncRNA downstream 35392 5150591 ~ 5165109 (-) True G70759
TU94673 lncRNA downstream 58001 5142076 ~ 5142500 (-) True G70755
TU94671 lncRNA downstream 90668 5109585 ~ 5109833 (-) True G70753
TU94670 lncRNA downstream 108310 5091903 ~ 5092191 (-) True G70752
TU94666 lncRNA downstream 127073 5073145 ~ 5073428 (-) True G70748
TU94707 lncRNA upstream 44197 5246455 ~ 5246895 (-) True G70785
TU94725 lncRNA upstream 95397 5297655 ~ 5299308 (-) False G70803
TU94726 lncRNA upstream 95497 5297755 ~ 5307035 (-) True G70803
TU94727 lncRNA upstream 105015 5307273 ~ 5307762 (-) True G70804
TU94729 lncRNA upstream 106664 5308922 ~ 5309526 (-) True G70806
XM_039806021.1 mRNA downstream 44173 5106812 ~ 5156328 (-) True LOC120562332
XM_039806810.1 mRNA downstream 288573 4902496 ~ 4911928 (-) True fam210aa
XM_039805873.1 mRNA downstream 587950 4611385 ~ 4612551 (-) True LOC120562255
XM_039806963.1 mRNA downstream 737870 4445782 ~ 4462631 (-) False ptpn2a
XM_039806962.1 mRNA downstream 737871 4445782 ~ 4462630 (-) True ptpn2a
XM_039806020.1 mRNA upstream 61175 5263433 ~ 5264356 (-) True LOC120562331
XM_039805867.1 mRNA upstream 598126 5800384 ~ 5865827 (-) True LOC120562245
XM_039805866.1 mRNA upstream 598126 5800384 ~ 5801912 (-) False LOC120562245
XM_039805868.1 mRNA upstream 598126 5800384 ~ 5801904 (-) False LOC120562245
XM_039805858.1 mRNA upstream 612963 5815221 ~ 5817189 (-) True LOC120562243
XR_005639743.1 other downstream 44171 5155932 ~ 5156330 (-) False LOC120562332
XR_005639742.1 other downstream 755448 4411134 ~ 4445053 (-) False cep76
XR_005639741.1 other downstream 755448 4411134 ~ 4445053 (-) False cep76
TU94370 other downstream 1122722 4072324 ~ 4077779 (-) True eny2
XR_005639715.1 other upstream 613987 5816245 ~ 5817189 (-) False LOC120562243
TU95121 other upstream 2294805 7497063 ~ 7500153 (-) True G71108
XR_005639915.1 other upstream 2373107 7575365 ~ 7609859 (-) False enpp2
TU95317 other upstream 2593915 7796173 ~ 7807092 (-) True G71261
TU95328 other upstream 2704542 7906800 ~ 7909302 (-) True G71269

Expression Profile