RNA id: XR_005639724.1


Basic Information

Item Value
RNA id XR_005639724.1
length 1452
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC120562256
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 4613824 ~ 4615309 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATATAGATACACACGCTTTGCTGACCAAATGACTTATGTTCCTATAATATACTGCCTAATTATTACAGCAAGCTGCCTAGACTTAACGAGCTAAAAGTATGCTGCACAAGAACAGAGCCAAGGCTGCACACAGGTGGCCTGCATCGTGCAAAGGAGGACATGTTCCTCTGTGGGATGCAGTAAGCAAGGACGGAGGACACCAAGACCTGGCTCAGTCACAATCCATCAAAAGCAACAGCCCACTTTGTAGAGACAGATGTTCGTGTGTGATATGTAACTGCCCttgttaaacttcaataaaagacaggcaaaagaggaagagagtcagAGCTCACTGGTGAGAAGCAGACTGCGGAGTCTGCTTACGGAGTGATGCTCTCCTTCTATAGAAGCCTATTGTATTAAtacatatctgtgtctgtgaagtTATTGCTATCTATTTCAGAGAAGAAGTCCTCACCTGGGAGTGCACCTTGAAGCACGACAATTGGGGGCTCGTCTgggataaaaacaaaaagaggatTCTTCAAATTGATTGACAAAGGTTCGGTCCAAGGGTGAAAAGTCGCGTTGAACATCTGGCGCCATAAATAAGGTAAGCAGACCATTATTCTGCATTGACTATTCTAAATCAAGGGTGTTCAACGTCTTAGTAACCCACAGACCgctaaaaataattaattaaatacataGTGACAACTTCCATTTCTATAAAGGTACAGGAAATATGGTATGGTTTATGGAACAAATATGAGGAAATATTTGTGAAAGTCTGAGTTTGGCAACTCCACCCGTGTCTTGACGAGGAGCGGTTTTGGCTGGGTTGAAACACCCGAGAATTGAGacatcttaaaaacaaaaaggttaagTTAAGGTTAATAAGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCAGGTAATTGTAGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCCGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCAGGTAATTGTAGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCCGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCAGGTAATTGTAGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCTGGGGTAAGTCCTCCACAGTAGAGGTAAGTCCCCAAAGGAGTTGAAGTCTCCTAGGTATGACTGGTGAACGATTGTATTATTGAACCATTTCACACTATTTAGGTGATATGACAAAATAATCCAATGTTCACATGActtgttggttttggtgtcaGACAATTGAGCTAGTTCGATTGTCCAAAGGCTGAGAACCAGGGTATAGCGAGCCATAGATCTCAGCTGGCCAAAATCATAGGGAAACTTGATTTTGGTGTCAAATAGGAATATTACTTTCCTGTTTAAGGGTTGAGAACCAGGGACATAGTGTCCCATAAATCTCAACTGGCCACAAtcaaggttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94514 lncRNA downstream 95270 4517132 ~ 4518554 (-) True G70613
TU94471 lncRNA downstream 180050 4432496 ~ 4433774 (-) False LOC120562328
TU94468 lncRNA downstream 204781 4408840 ~ 4409043 (-) True G70572
TU94430 lncRNA downstream 255006 4357980 ~ 4358818 (-) True G70538
TU94422 lncRNA downstream 315717 4297761 ~ 4298107 (-) True G70530
XR_005639728.1 lncRNA upstream 51930 4667239 ~ 4668215 (-) True LOC120562259
TU94564 lncRNA upstream 51972 4667281 ~ 4667661 (-) False LOC120562259
TU94580 lncRNA upstream 108808 4724117 ~ 4724379 (-) True G70669
TU94582 lncRNA upstream 119468 4734777 ~ 4734979 (-) True G70671
TU94583 lncRNA upstream 119717 4735026 ~ 4735411 (-) True G70672
XM_039805873.1 mRNA downstream 1273 4611385 ~ 4612551 (-) True LOC120562255
XM_039806963.1 mRNA downstream 151193 4445782 ~ 4462631 (-) False ptpn2a
XM_039806962.1 mRNA downstream 151194 4445782 ~ 4462630 (-) True ptpn2a
XM_039806019.1 mRNA downstream 168771 4361995 ~ 4445053 (-) False cep76
XM_039806018.1 mRNA downstream 168772 4410849 ~ 4445052 (-) True cep76
XM_039806810.1 mRNA upstream 287187 4902496 ~ 4911928 (-) True fam210aa
XM_039806021.1 mRNA upstream 491503 5106812 ~ 5156328 (-) True LOC120562332
XM_039805187.1 mRNA upstream 585192 5200501 ~ 5202258 (-) True LOC120561869
XM_039806020.1 mRNA upstream 648124 5263433 ~ 5264356 (-) True LOC120562331
XM_039805867.1 mRNA upstream 1185075 5800384 ~ 5865827 (-) True LOC120562245
XR_005639742.1 other downstream 168771 4411134 ~ 4445053 (-) False cep76
XR_005639741.1 other downstream 168771 4411134 ~ 4445053 (-) False cep76
TU94370 other downstream 536045 4072324 ~ 4077779 (-) True eny2
XR_005639743.1 other upstream 540623 5155932 ~ 5156330 (-) False LOC120562332
XR_005639715.1 other upstream 1200936 5816245 ~ 5817189 (-) False LOC120562243
TU95121 other upstream 2881754 7497063 ~ 7500153 (-) True G71108
XR_005639915.1 other upstream 2960056 7575365 ~ 7609859 (-) False enpp2
TU95317 other upstream 3180864 7796173 ~ 7807092 (-) True G71261

Expression Profile